Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13m14
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.8  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +2

Query: 398 LYHQ--LDPMKDLSLGLECALKXXXXXXXXXXXTIVAKNLVHGILDLV 535
           LYH   L  M  L+L L CA+K           +++ ++L H   DLV
Sbjct: 114 LYHDKTLLYMSKLTLVLSCAMKFESYPHDTQICSMMIESLSHTTQDLV 161


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 605  IRDHGFSSREKTRDQSQIQ*AYRTQDQGFREQDS*QQ*LPQKRRK 471
            I DH     ++ + Q Q Q   + Q Q   +Q   QQ  PQ++++
Sbjct: 1492 IVDHSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQ 1536


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 702 YSFADNKWWNYFSTRSSVFSVYQSLAYHY 616
           YS   +   NY +T   V S YQ+   HY
Sbjct: 265 YSALSSHNLNYVNTEQFVKSQYQANNVHY 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,170
Number of Sequences: 438
Number of extensions: 3889
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)