Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13m13
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    28   1.5  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    27   1.9  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.8  

>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 215 YVSNITQSKLVLGLHMNKYRLYIFTFLYNFSFLFCKLVQNSE-NKSNYFLMF 367
           YVSN T   L   L+   +R        N+ FL+  +V++SE NK  + + F
Sbjct: 46  YVSNYTTVFLSKVLNQPNFRFLEMDLATNYKFLYQFMVEDSEINKITHIINF 97


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 13  QRLRDFKLKKVKKSIKMTFSSNKSSNRNY 99
           Q   +F+ K  K   K+  S NKS NRNY
Sbjct: 112 QVFAEFREKDKKDPAKLLVSHNKSPNRNY 140


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 470 FFYHEKYTTDAINISHLR 523
           F YH+KYTTD + +   R
Sbjct: 201 FLYHKKYTTDKLLVGQNR 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,090
Number of Sequences: 5004
Number of extensions: 44593
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)