Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13m13
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.1  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              22   6.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   6.3  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   6.3  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   8.4  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 79  KSSNRNYPLMKKHAHAHFRCTSVFNISI 162
           K+ N N+    +H   H R T   N+S+
Sbjct: 116 KNQNNNHYTSHQHLRTHLRGTLTVNVSV 143


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 266 KYRLYIFTFLYNFSFLFCKLVQNSENKSNYFL 361
           KY+ YI     N+S  +     N ENK NYF+
Sbjct: 195 KYKEYIIPA--NYSGWYLNHDYNLENKLNYFI 224


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 485 FHDKKKPKDFV*AKFQIINRISNLNH 408
           FH+ KK +D   A+ ++IN   N  +
Sbjct: 42  FHELKKLRDSSEARIKLINEEENFRN 67


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 594 IFVINYFNQLFIIEASHC 541
           IFVI++F     I  SHC
Sbjct: 62  IFVISFFGCCGAIRESHC 79


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +2

Query: 323 LVQNSENKSNYFLMF 367
           L+ N+EN+  YF+++
Sbjct: 375 LIGNNENEGTYFILY 389


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +2

Query: 323 LVQNSENKSNYFLMF 367
           L+ N+EN+  YF+++
Sbjct: 375 LIGNNENEGTYFILY 389


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 294 RNVKIYSLYLFICKPNTNFDW 232
           +N+K+Y L   +   N N DW
Sbjct: 91  KNIKLYGLTKNLEIKNYNIDW 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,852
Number of Sequences: 438
Number of extensions: 3340
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)