Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13m12
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy... 45 1e-05
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 41 1e-04
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 41 1e-04
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 39 8e-04
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 38 0.001
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 38 0.002
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 37 0.003
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce... 36 0.005
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 29 0.82
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 28 1.4
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.8
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 25 7.6
>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 44.8 bits (101), Expect = 1e-05
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 1/140 (0%)
Frame = -2
Query: 559 IVERAGRKPLLLTTALVSGASMCALA-TWFLCRRWGAELPASLPVLALCLCIFCDAAGLQ 383
+VE+ GRK + L ++G LA +W G + F G
Sbjct: 402 LVEKLGRKWIQLQGLFITGLMFAILAGSWDTISTGGR-------FACFVIAQFFSNFGPN 454
Query: 382 PVSVVITGEIFSFKYRGTVXXXXXXXXXXXXFLQMLFFKPVANVVGLYAAFYFFGGVCLL 203
+ + E+F + RGT L L F + +V+G + F G C+
Sbjct: 455 ATTFLYPAEVFPARVRGTAHGLSAALGKCGAILASLLFNFLTSVIGYGNVMWIFCG-CMW 513
Query: 202 TALYVVLVVPETKKRRIDEI 143
A++ L++PETK R DEI
Sbjct: 514 GAIFFTLLLPETKMRDADEI 533
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 41.1 bits (92), Expect = 1e-04
Identities = 35/139 (25%), Positives = 53/139 (38%)
Frame = -2
Query: 559 IVERAGRKPLLLTTALVSGASMCALATWFLCRRWGAELPASLPVLALCLCIFCDAAGLQP 380
+VE GRK + L +++G LA RW E+ + G
Sbjct: 413 LVEILGRKWIQLQGFVITGLMFAILAG-----RWN-EISTGGRFACFVIAQLFSNFGPNS 466
Query: 379 VSVVITGEIFSFKYRGTVXXXXXXXXXXXXFLQMLFFKPVANVVGLYAAFYFFGGVCLLT 200
+ + E+F + RGT L L F + V+G + F G C+
Sbjct: 467 TTFIYPAEVFPARVRGTAHGVSAALGKCGAILASLLFNFLTGVIGYGNVMWIFCG-CMWG 525
Query: 199 ALYVVLVVPETKKRRIDEI 143
+ L++PETK R DEI
Sbjct: 526 GILFTLLLPETKGRDADEI 544
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 41.1 bits (92), Expect = 1e-04
Identities = 34/139 (24%), Positives = 54/139 (38%)
Frame = -2
Query: 559 IVERAGRKPLLLTTALVSGASMCALATWFLCRRWGAELPASLPVLALCLCIFCDAAGLQP 380
+VE GRK + L +++G LA RW E+ + G
Sbjct: 414 LVEILGRKWIQLQGFVITGLMFAILAG-----RWN-EISTGGRFACFVIAQLFSNFGPNS 467
Query: 379 VSVVITGEIFSFKYRGTVXXXXXXXXXXXXFLQMLFFKPVANVVGLYAAFYFFGGVCLLT 200
+ + E+F + RGT L L F + +++G + F G C+
Sbjct: 468 TTFIYPAEVFPARVRGTAHGISAALGKCGAILASLLFNFLTSIIGYGNVMWIFCG-CMWG 526
Query: 199 ALYVVLVVPETKKRRIDEI 143
+ L++PETK R DEI
Sbjct: 527 GILFTLLLPETKGRDADEI 545
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 38.7 bits (86), Expect = 8e-04
Identities = 28/92 (30%), Positives = 38/92 (41%)
Frame = -2
Query: 418 CLCIFCDAAGLQPVSVVITGEIFSFKYRGTVXXXXXXXXXXXXFLQMLFFKPVANVVGLY 239
CL IF + P + VI GE + +YR FL F + N +G +
Sbjct: 343 CLFIFSFSQTWAPAAYVIVGESYPVRYRSKCAAVATSANWFWNFLISFFTPFITNSIG-F 401
Query: 238 AAFYFFGGVCLLTALYVVLVVPETKKRRIDEI 143
Y F L A + L V ETK R ++EI
Sbjct: 402 KYGYIFASCNLTGAAIIFLFVHETKGRTLEEI 433
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 38.3 bits (85), Expect = 0.001
Identities = 42/166 (25%), Positives = 64/166 (38%), Gaps = 5/166 (3%)
Frame = -2
Query: 625 SPNQQAMALGAVQVAGSVLASSIVERAGRKPLLLTTALVSGASM---CALATWFLCRRWG 455
SP AM L AV + ++ER GR+ L+ + A+ + L + G
Sbjct: 303 SPYLSAMILDAVNFGCTFGGMYVLERFGRRNPLIIGGIWQSICFFIYSAVGSRALYHKNG 362
Query: 454 AE--LPASLPVLALCLCIFCDAAGLQPVSVVITGEIFSFKYRGTVXXXXXXXXXXXXFLQ 281
++ ++ CL IF A P + VI GE + +YR FL
Sbjct: 363 TSNTRAGAVMIVMACLFIFGFAQTWAPAAYVIVGESYPVRYRSKCAAVATASNWLWNFL- 421
Query: 280 MLFFKPVANVVGLYAAFYFFGGVCLLTALYVVLVVPETKKRRIDEI 143
+ FF P + Y F L A+ + L ETK ++EI
Sbjct: 422 ISFFTPFIQASIGFKYGYVFASCNLTGAIVIFLFAKETKGLTLEEI 467
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/92 (28%), Positives = 38/92 (41%)
Frame = -2
Query: 418 CLCIFCDAAGLQPVSVVITGEIFSFKYRGTVXXXXXXXXXXXXFLQMLFFKPVANVVGLY 239
CL IF A P + VI GE + +YR F+ F ++N +G +
Sbjct: 375 CLFIFSFAQTWAPAAYVIVGESYPIRYRSKCAAVATASNWFWNFMISFFTPFISNSIG-F 433
Query: 238 AAFYFFGGVCLLTALYVVLVVPETKKRRIDEI 143
Y F L A+ + L ETK ++EI
Sbjct: 434 KYGYVFAACNLCAAIIIFLFAKETKGLTLEEI 465
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 36.7 bits (81), Expect = 0.003
Identities = 36/161 (22%), Positives = 64/161 (39%), Gaps = 5/161 (3%)
Frame = -2
Query: 610 AMALGAVQVAGSVLASSIVERAGRK-PLLLTTALVSGASM--CALATWFLCRRWGAE--L 446
A+ LGA+ + A ++ GR+ PL+ A S A+ L + G
Sbjct: 304 AVILGAINFGTTFGALYTIDNLGRRNPLIFGAAFQSICFFIYAAVGDRKLIYKNGTSDHR 363
Query: 445 PASLPVLALCLCIFCDAAGLQPVSVVITGEIFSFKYRGTVXXXXXXXXXXXXFLQMLFFK 266
S+ ++ CL +F P+ VI GE F +YR F+ F
Sbjct: 364 AGSVMIVFSCLFLFSYCCSWGPMGWVIVGETFPIRYRSKCASVATSGNWLGNFMISFFTP 423
Query: 265 PVANVVGLYAAFYFFGGVCLLTALYVVLVVPETKKRRIDEI 143
+ N +G + Y + + L ++ + + ETK ++E+
Sbjct: 424 FINNAIG-FKLGYIYACINLFSSFMIFFLAKETKGLTLEEV 463
>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 583
Score = 35.9 bits (79), Expect = 0.005
Identities = 29/123 (23%), Positives = 42/123 (34%)
Frame = -2
Query: 511 VSGASMCALATWFLCRRWGAELPASLPVLALCLCIFCDAAGLQPVSVVITGEIFSFKYRG 332
+ G +C L L W + + L F G VI E+F + R
Sbjct: 434 IQGFLICCLLFGVLAGTWET-ISTGGRFACVALAQFFFNFGPNTTCFVIPAEVFPSRVRA 492
Query: 331 TVXXXXXXXXXXXXFLQMLFFKPVANVVGLYAAFYFFGGVCLLTALYVVLVVPETKKRRI 152
L L F + V+G + F G C++ V L++PET R
Sbjct: 493 FSHGICAACGKAGAILSALLFNKLTEVIGFGNVLWIFFG-CMVAGAVVTLILPETANRDA 551
Query: 151 DEI 143
D I
Sbjct: 552 DLI 554
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 28.7 bits (61), Expect = 0.82
Identities = 33/170 (19%), Positives = 67/170 (39%), Gaps = 9/170 (5%)
Frame = -2
Query: 625 SPNQQAMALGAVQVAGSVLASSIVERAGRKPLLLTT--ALVSGASMCALATWFLCRRWGA 452
+P + + A +++A +++ GR+ LLL T +++ +CA+A FL +
Sbjct: 372 NPTATGLIIAATNFVFTIVAFGVIDFFGRRILLLLTVWGMIAALIVCAVAFHFLPKDENG 431
Query: 451 ELP-------ASLPVLALCLCIFCDAAGLQPVSVVITGEIFSFKYRGTVXXXXXXXXXXX 293
A + ++++ + + A+GL + E+F RG
Sbjct: 432 NYTSGQSNAWAIVVLISMIVYVASYASGLGNLPWQ-QSELFPMSVRGLGTGMSTAVNWAG 490
Query: 292 XFLQMLFFKPVANVVGLYAAFYFFGGVCLLTALYVVLVVPETKKRRIDEI 143
F + + + F +GG+C L L + P+ I+EI
Sbjct: 491 NLGIGASFLTLMSEITPTGTFALYGGLCFLGWLGALFCYPDLTDYTIEEI 540
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +3
Query: 480 VASAHMLAPDTSAVVSSSGFLPALSTMLEASTEPATCTAPSAMACWLGESGGRAPPAAS 656
VA + D A+ P ++ +LEAS+ P+T PS E+ P +++
Sbjct: 108 VAGLWVPPADALALAKDYSMTPFINALLEASSTPSTYATPSRPTAQKSETSEGEPESST 166
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 507 DTSAVVSSSGFLPALSTMLEASTE-PATCTAPSAMACWLGESGGRAPPAAS 656
DTS S+S +PA S+ AST ++ PS+ + L S A ++S
Sbjct: 11 DTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSS 61
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 507 DTSAVVSSSGFLPALSTMLEASTEPATCTAPSAMA 611
DTS+ VSS+ P+L+ L+ S P+T T P A
Sbjct: 155 DTSSTVSST---PSLNHSLQNSMPPSTPTPPPVWA 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,658,210
Number of Sequences: 5004
Number of extensions: 24086
Number of successful extensions: 92
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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