Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13m10
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    28   1.1  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    27   2.0  
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    27   2.6  
SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    27   2.6  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    27   3.4  
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    26   4.5  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   6.0  
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr...    25   7.9  

>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +2

Query: 215 INFVNSSQNIDKVK---TKTKTKLRSFDSIYEKNPGVTK 322
           I+ +NS  N+DKVK     + +  ++FDS  EK P + +
Sbjct: 149 ISILNSLDNLDKVKYLLHDSSSLTKAFDSYKEKRPSIVE 187


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 304 KSWCYQMFTHINSISNIFGNCTLLMRKGNI 393
           KS+CY  FT +   SN+  N   LM   NI
Sbjct: 713 KSYCYTTFTALRKSSNLILNLFSLMVDANI 742


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 203 IKSCINFVNSSQNIDKVKTKTKTKLRSFDSIYEKNP-GVTKCLRILT 340
           IK CI    +  N + VK K K  ++S + +  KNP  + + LRI T
Sbjct: 87  IKECILRHKTRLNAEFVKLKVKKGVKSHEELALKNPVSLPRWLRINT 133


>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/42 (21%), Positives = 27/42 (64%)
 Frame = +2

Query: 197 SKIKSCINFVNSSQNIDKVKTKTKTKLRSFDSIYEKNPGVTK 322
           +++++  N   + + ++ ++TK +T+ + ++++ EK   VTK
Sbjct: 139 TQVEASTNNAKAVEELETLRTKLETRDKEYETLAEKYAAVTK 180


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 481 FFTCVNVPKM*FHEIVYRKP*MSINKND*IIRLLDCLSYLTSKSLC 618
           FFT + V  +    +   +P  S+N+ND  +    C+S L + S+C
Sbjct: 9   FFTAIYVVSLYTFPVARPRP--SLNRNDPKVITARCISVLLASSVC 52


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +2

Query: 203 IKSCINFVNSSQNIDKVKTKTKTKLRSFDSIYEKNPGVTKCLRILTQYR 349
           IK+   F     N+D    +  T+       ++  PGV + L+I+T+Y+
Sbjct: 118 IKNIPGFKTRHDNVDFAIIRENTEGEYSGLEHQSVPGVVESLKIITEYK 166


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 121 YIFNNNHKYLQHLCLFFTSYITC 189
           Y  +N H  L  +CLF   Y++C
Sbjct: 469 YREDNEHSGLVRICLFIVHYLSC 491


>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 323

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 236 QNIDKVKTKTKTKLRSFDSIYEKNPGVTKCLRILTQYRIF 355
           +  +K+K  + T  ++   I E   G  KCL+++ Q RIF
Sbjct: 11  EETEKLKDSSSTDEKTRSEIVE---GYEKCLKLVLQLRIF 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,418
Number of Sequences: 5004
Number of extensions: 50545
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)