Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13m07
(581 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF393495-1|AAL60420.1| 136|Apis mellifera odorant binding prote... 26 0.24
AF393492-1|AAL60417.1| 136|Apis mellifera odorant binding prote... 26 0.24
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 25 0.41
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 25 0.41
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 25 0.41
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 25 0.41
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 25 0.41
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 25 0.41
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 25 0.41
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 24 1.3
AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength rhodo... 23 2.2
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 22 5.1
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 21 6.7
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 21 8.9
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 8.9
>AF393495-1|AAL60420.1| 136|Apis mellifera odorant binding protein
ASP4 protein.
Length = 136
Score = 26.2 bits (55), Expect = 0.24
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -3
Query: 522 TNSFIPNDFVNKIIPVLSKAVQKSPEKFICLISP---DCAL 409
T P+DF + ++ + V K+ ++ C+++ DCAL
Sbjct: 80 TRELTPDDFTEDVHEIIEQCVSKAADEDECMVARKYIDCAL 120
>AF393492-1|AAL60417.1| 136|Apis mellifera odorant binding protein
ASP4 protein.
Length = 136
Score = 26.2 bits (55), Expect = 0.24
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -3
Query: 522 TNSFIPNDFVNKIIPVLSKAVQKSPEKFICLISP---DCAL 409
T P+DF + ++ + V K+ ++ C+++ DCAL
Sbjct: 80 TRELTPDDFTEDVHEIIEQCVSKAADEDECMVARKYIDCAL 120
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 25.4 bits (53), Expect = 0.41
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 167 LSHMAHRYKILSINR-NLNIIQNYSKMNYIPDHNIQKLKIQK*MY 36
+S +++ YK + N N N NY K+ Y NI+++ + +Y
Sbjct: 82 ISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQIPVPVPIY 126
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 25.4 bits (53), Expect = 0.41
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 167 LSHMAHRYKILSINR-NLNIIQNYSKMNYIPDHNIQKLKIQK*MY 36
+S +++ YK + N N N NY K+ Y NI+++ + +Y
Sbjct: 82 ISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQIPVPVPIY 126
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 25.4 bits (53), Expect = 0.41
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 167 LSHMAHRYKILSINR-NLNIIQNYSKMNYIPDHNIQKLKIQK*MY 36
+S +++ YK + N N N NY K+ Y NI+++ + +Y
Sbjct: 82 ISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQIPVPVPIY 126
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 25.4 bits (53), Expect = 0.41
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 167 LSHMAHRYKILSINR-NLNIIQNYSKMNYIPDHNIQKLKIQK*MY 36
+S +++ YK + N N N NY K+ Y NI+++ + +Y
Sbjct: 82 ISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQIPVPVPIY 126
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 25.4 bits (53), Expect = 0.41
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 167 LSHMAHRYKILSINR-NLNIIQNYSKMNYIPDHNIQKLKIQK*MY 36
+S +++ YK + N N N NY K+ Y NI+++ + +Y
Sbjct: 82 ISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQIPVPVPIY 126
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 25.4 bits (53), Expect = 0.41
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 167 LSHMAHRYKILSINR-NLNIIQNYSKMNYIPDHNIQKLKIQK*MY 36
+S +++ YK + N N N NY K+ Y NI+++ + +Y
Sbjct: 82 ISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQIPVPVPIY 126
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 25.4 bits (53), Expect = 0.41
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 167 LSHMAHRYKILSINR-NLNIIQNYSKMNYIPDHNIQKLKIQK*MY 36
+S +++ YK + N N N NY K+ Y NI+++ + +Y
Sbjct: 82 ISSLSNNYKYSNYNNYNNNYNTNYKKLQYYNIINIEQIPVPVPIY 126
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 23.8 bits (49), Expect = 1.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 167 LSHMAHRYKILSINRNLNIIQNYSKMNYIPDHNIQKL 57
+S +++ YK + N N NY+ N ++N +KL
Sbjct: 315 ISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKL 351
>AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength
rhodopsin protein.
Length = 152
Score = 23.0 bits (47), Expect = 2.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 125 DLCLRFCIYVPYVINIYF 178
D + FC+ P VIN Y+
Sbjct: 64 DFLMMFCMSPPMVINCYY 81
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.8 bits (44), Expect = 5.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 128 NRNLNIIQNYSKMNYIPDHNIQKLKIQK*MY 36
N N N NY K+ Y NI+++ + +Y
Sbjct: 100 NYNNNYNTNYKKLQYYNIINIEQIPVPVPIY 130
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 21.4 bits (43), Expect = 6.7
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +2
Query: 32 AYTFIFVSLAFEYCGQVCSSFWNNFELY*DYD 127
A + F+S+ E C+++WN YD
Sbjct: 84 AIFYFFMSMRSELPWGSCNNYWNTKNCVNPYD 115
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 21.0 bits (42), Expect = 8.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 134 LRFCIYVPYVINIYF 178
+ FC+ P VIN Y+
Sbjct: 101 MMFCMSPPMVINCYY 115
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.0 bits (42), Expect = 8.9
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 276 KDRFFLTFYDLKNFNV 229
KD FFL DL+N ++
Sbjct: 356 KDLFFLQILDLRNNSI 371
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,985
Number of Sequences: 438
Number of extensions: 4172
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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