Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13m06
         (280 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual    24   4.6  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    23   6.1  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    23   8.0  

>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 76  WDWVDIVKHLSQV 38
           WD  D+ KH+SQ+
Sbjct: 114 WDPTDVAKHISQI 126


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -3

Query: 266 GKGVRDTGCPGRGGRVHQGRKNRDRXSDGNY*XXRKEGAAH 144
           G G+R     GRGGR+++ +  R   S G+      E   H
Sbjct: 641 GTGMRTNRGRGRGGRMNRMQHPRPLQSGGSVNKQSAEPTTH 681


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 272 PQGKGVRDTGCPGRGGRVH 216
           P G G +  G   RGGRVH
Sbjct: 89  PSGPGSKRGGRRERGGRVH 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 848,275
Number of Sequences: 5004
Number of extensions: 9240
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)