Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13m06
(280 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0378 - 28438918-28439064,28439280-28439313,28439859-284399... 30 0.23
06_03_0685 - 23499779-23500204 27 2.1
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418... 27 2.8
02_05_1104 + 34146610-34146614,34147108-34147231,34147480-341475... 26 3.7
02_05_1101 + 34122061-34122065,34122559-34122682,34122931-341229... 26 3.7
11_06_0743 + 26847652-26849424 25 6.5
10_05_0007 + 7759814-7760063,7760367-7760507,7760580-7761007 25 6.5
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493... 25 6.5
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121... 25 8.6
>02_05_0378 -
28438918-28439064,28439280-28439313,28439859-28439963,
28440402-28441558
Length = 480
Score = 30.3 bits (65), Expect = 0.23
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 236 GRGGRVHQGRKNRDRXSDGN-Y*XXRKEGAAHEXTEAPSVGQXXTRKGR 93
G GGR H+ + R D N R++GA T APS R+GR
Sbjct: 257 GNGGRNHEAKDGPGRSEDANGTAEIREDGALMPPTRAPSSLSDTHREGR 305
>06_03_0685 - 23499779-23500204
Length = 141
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 263 KGVRDTGCPGRGGRVHQGR-KNRDRXSDG 180
+G R G P RGGR+H+ R + R R + G
Sbjct: 74 RGGRIHGLPPRGGRIHRRRPQGRHRRASG 102
>06_01_0584 -
4178391-4178732,4178854-4178915,4180361-4180481,
4180592-4180732,4180830-4180959,4182306-4182436,
4182528-4182601,4182680-4182741,4183135-4183209,
4184658-4184760,4184835-4184991,4185549-4185743,
4186204-4186282,4186697-4186806,4187249-4187374,
4187475-4187541,4187622-4187791,4187880-4188018,
4188361-4188522,4188672-4188772,4188852-4188994,
4189438-4189537,4190364-4190414,4191062-4191169,
4191279-4191494,4191585-4191721,4191820-4191915,
4192017-4192234,4192764-4192925,4193006-4193163,
4194221-4194379
Length = 1364
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = -3
Query: 251 DTGCPGRGGRVHQGRKNRDRXSDGNY*XXRKEGAAHEXTEAPSV 120
D P RGG G K RDR SDG +E A TE +
Sbjct: 24 DDDLPPRGG----GGKGRDRHSDGPTERIEREDAVSPLTEMEKI 63
>02_05_1104 +
34146610-34146614,34147108-34147231,34147480-34147514,
34149924-34150269
Length = 169
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/49 (30%), Positives = 18/49 (36%)
Frame = -3
Query: 266 GKGVRDTGCPGRGGRVHQGRKNRDRXSDGNY*XXRKEGAAHEXTEAPSV 120
G G D GC G G R +G + R GAA P+V
Sbjct: 54 GSGAGDDGCSGVGDDSDGDGSARTPEVEGRWAVGRGSGAASNEARTPAV 102
>02_05_1101 +
34122061-34122065,34122559-34122682,34122931-34122965,
34125375-34125720
Length = 169
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/49 (30%), Positives = 18/49 (36%)
Frame = -3
Query: 266 GKGVRDTGCPGRGGRVHQGRKNRDRXSDGNY*XXRKEGAAHEXTEAPSV 120
G G D GC G G R +G + R GAA P+V
Sbjct: 54 GSGAGDDGCSGVGDDSDGDGSARTPEVEGRWAVGRGSGAASNEARTPAV 102
>11_06_0743 + 26847652-26849424
Length = 590
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 257 VRDTGCPGRGGRVHQGRKNRDR 192
VR T PGR R +GR+N+ R
Sbjct: 258 VRCTYTPGRSARGRRGRRNKPR 279
>10_05_0007 + 7759814-7760063,7760367-7760507,7760580-7761007
Length = 272
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2
Query: 60 SSNICLKCRISPRHDTNK 7
+S CL C S HDTN+
Sbjct: 123 ASRFCLNCLTSTAHDTNR 140
>02_05_0272 -
27348537-27348728,27349035-27349192,27349292-27349323,
27349420-27349514,27349614-27349687,27349800-27349878,
27350015-27350078,27350156-27350218,27350300-27350442,
27350566-27350703,27350792-27350913,27350993-27351158,
27351276-27351398,27351609-27351680,27351773-27351880,
27352481-27352597,27352727-27352865,27352974-27353080,
27353167-27353276,27353892-27354025,27354106-27354255,
27354329-27354549,27354647-27355318
Length = 1092
Score = 25.4 bits (53), Expect = 6.5
Identities = 19/59 (32%), Positives = 23/59 (38%)
Frame = -3
Query: 236 GRGGRVHQGRKNRDRXSDGNY*XXRKEGAAHEXTEAPSVGQXXTRKGR*ETPRMGLGXH 60
GRGG HQGR R + G + G E G+ R+G R G G H
Sbjct: 56 GRGGGQHQGRGGRYQGRGGPT-SHQPGGGPVEYQAHEYYGRGVQRQGGMPQHRSGSGGH 113
>02_01_0177 +
1214226-1214294,1214707-1214794,1216095-1216308,
1216413-1216738,1216860-1217013,1217377-1217438,
1218078-1218133,1219456-1221279,1221775-1222698,
1222855-1222866
Length = 1242
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 35 RHLRQMFDDVXPIPSAGFLTALS 103
RHL++ + P+P GFLTA S
Sbjct: 285 RHLQKAEKVLDPVPLIGFLTARS 307
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,167,131
Number of Sequences: 37544
Number of extensions: 80907
Number of successful extensions: 205
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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