Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13m06
         (280 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC107432-1|AAI07433.1|  188|Homo sapiens RWD domain containing 4...    40   0.001
BC067752-1|AAH67752.1|  188|Homo sapiens RWD domain containing 4...    40   0.001
BC017472-1|AAH17472.1|  188|Homo sapiens RWD domain containing 4...    40   0.001
AC093081-1|AAQ96848.1|  125|Homo sapiens unknown protein.              40   0.001

>BC107432-1|AAI07433.1|  188|Homo sapiens RWD domain containing 4A
           protein.
          Length = 188

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = -1

Query: 94  GEKPRGWDWVDIVKHLSQ 41
           GE PRGW+WVD+VKHLS+
Sbjct: 164 GELPRGWNWVDVVKHLSK 181


>BC067752-1|AAH67752.1|  188|Homo sapiens RWD domain containing 4A
           protein.
          Length = 188

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = -1

Query: 94  GEKPRGWDWVDIVKHLSQ 41
           GE PRGW+WVD+VKHLS+
Sbjct: 164 GELPRGWNWVDVVKHLSK 181


>BC017472-1|AAH17472.1|  188|Homo sapiens RWD domain containing 4A
           protein.
          Length = 188

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = -1

Query: 94  GEKPRGWDWVDIVKHLSQ 41
           GE PRGW+WVD+VKHLS+
Sbjct: 164 GELPRGWNWVDVVKHLSK 181


>AC093081-1|AAQ96848.1|  125|Homo sapiens unknown protein.
          Length = 125

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 14/18 (77%), Positives = 17/18 (94%)
 Frame = -1

Query: 94  GEKPRGWDWVDIVKHLSQ 41
           GE PRGW+WVD+VKHLS+
Sbjct: 101 GELPRGWNWVDVVKHLSK 118


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,451,952
Number of Sequences: 237096
Number of extensions: 426016
Number of successful extensions: 901
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 76,859,062
effective HSP length: 70
effective length of database: 60,262,342
effective search space used: 1325771524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)