Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13m06
(280 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY118478-1|AAM49847.1| 214|Drosophila melanogaster GM16226p pro... 43 7e-05
AE014134-2965|AAF53695.1| 214|Drosophila melanogaster CG10343-P... 43 7e-05
AY069397-1|AAL39542.1| 669|Drosophila melanogaster LD10094p pro... 27 2.7
AJ459408-1|CAD30679.1| 612|Drosophila melanogaster DEK protein ... 27 2.7
AE013599-2360|AAM70892.1| 669|Drosophila melanogaster CG5935-PB... 27 2.7
AE013599-2359|AAS64830.2| 612|Drosophila melanogaster CG5935-PD... 27 2.7
AE013599-2358|AAF57943.2| 663|Drosophila melanogaster CG5935-PA... 27 2.7
AE013599-2357|AAM70891.1| 667|Drosophila melanogaster CG5935-PC... 27 2.7
D17389-4|BAA04212.1| 5112|Drosophila melanogaster ryanodine rece... 27 4.7
D17389-3|BAA41471.1| 5112|Drosophila melanogaster ryanodine rece... 27 4.7
D17389-2|BAA41470.1| 5126|Drosophila melanogaster ryanodine rece... 27 4.7
D17389-1|BAA41469.1| 5126|Drosophila melanogaster ryanodine rece... 27 4.7
AE013599-723|AAM71084.1| 5113|Drosophila melanogaster CG10844-PD... 27 4.7
AE013599-722|AAM71083.1| 5127|Drosophila melanogaster CG10844-PC... 27 4.7
AE013599-721|AAM71082.1| 5113|Drosophila melanogaster CG10844-PB... 27 4.7
AE013599-720|AAF59036.2| 5127|Drosophila melanogaster CG10844-PA... 27 4.7
AE014298-836|AAF46116.2| 893|Drosophila melanogaster CG5921-PA,... 26 8.2
AE014298-835|AAN09159.1| 944|Drosophila melanogaster CG5921-PB,... 26 8.2
>AY118478-1|AAM49847.1| 214|Drosophila melanogaster GM16226p
protein.
Length = 214
Score = 42.7 bits (96), Expect = 7e-05
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = -1
Query: 130 RRAWDKXXLGKGGEKPRGWDWVDIVKHLSQ 41
RR W++ G++ RGWDWVD+VKHLSQ
Sbjct: 160 RRQWERTD--HKGDRERGWDWVDLVKHLSQ 187
>AE014134-2965|AAF53695.1| 214|Drosophila melanogaster CG10343-PA
protein.
Length = 214
Score = 42.7 bits (96), Expect = 7e-05
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = -1
Query: 130 RRAWDKXXLGKGGEKPRGWDWVDIVKHLSQ 41
RR W++ G++ RGWDWVD+VKHLSQ
Sbjct: 160 RRQWERTD--HKGDRERGWDWVDLVKHLSQ 187
>AY069397-1|AAL39542.1| 669|Drosophila melanogaster LD10094p
protein.
Length = 669
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 266 GKGVRDTGCPGRGGRVHQGRKNRDRXSD 183
G G P RGGR RK+R R SD
Sbjct: 440 GAGAAGRKVPSRGGRGRPARKSRRRNSD 467
>AJ459408-1|CAD30679.1| 612|Drosophila melanogaster DEK protein
protein.
Length = 612
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 266 GKGVRDTGCPGRGGRVHQGRKNRDRXSD 183
G G P RGGR RK+R R SD
Sbjct: 434 GAGAAGRKVPSRGGRGRPARKSRRRNSD 461
>AE013599-2360|AAM70892.1| 669|Drosophila melanogaster CG5935-PB,
isoform B protein.
Length = 669
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 266 GKGVRDTGCPGRGGRVHQGRKNRDRXSD 183
G G P RGGR RK+R R SD
Sbjct: 440 GAGAAGRKVPSRGGRGRPARKSRRRNSD 467
>AE013599-2359|AAS64830.2| 612|Drosophila melanogaster CG5935-PD,
isoform D protein.
Length = 612
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 266 GKGVRDTGCPGRGGRVHQGRKNRDRXSD 183
G G P RGGR RK+R R SD
Sbjct: 434 GAGAAGRKVPSRGGRGRPARKSRRRNSD 461
>AE013599-2358|AAF57943.2| 663|Drosophila melanogaster CG5935-PA,
isoform A protein.
Length = 663
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 266 GKGVRDTGCPGRGGRVHQGRKNRDRXSD 183
G G P RGGR RK+R R SD
Sbjct: 434 GAGAAGRKVPSRGGRGRPARKSRRRNSD 461
>AE013599-2357|AAM70891.1| 667|Drosophila melanogaster CG5935-PC,
isoform C protein.
Length = 667
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 266 GKGVRDTGCPGRGGRVHQGRKNRDRXSD 183
G G P RGGR RK+R R SD
Sbjct: 438 GAGAAGRKVPSRGGRGRPARKSRRRNSD 465
>D17389-4|BAA04212.1| 5112|Drosophila melanogaster ryanodine receptor
homologue protein.
Length = 5112
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 245 GCPGRGGRVHQGRKNRDRXSD 183
G P GG+V + +KNRD+ D
Sbjct: 3577 GAPAVGGKVKKKKKNRDKKRD 3597
>D17389-3|BAA41471.1| 5112|Drosophila melanogaster ryanodine receptor
homologue protein.
Length = 5112
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 245 GCPGRGGRVHQGRKNRDRXSD 183
G P GG+V + +KNRD+ D
Sbjct: 3577 GAPAVGGKVKKKKKNRDKKRD 3597
>D17389-2|BAA41470.1| 5126|Drosophila melanogaster ryanodine receptor
homologue protein.
Length = 5126
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 245 GCPGRGGRVHQGRKNRDRXSD 183
G P GG+V + +KNRD+ D
Sbjct: 3591 GAPAVGGKVKKKKKNRDKKRD 3611
>D17389-1|BAA41469.1| 5126|Drosophila melanogaster ryanodine receptor
homologue protein.
Length = 5126
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 245 GCPGRGGRVHQGRKNRDRXSD 183
G P GG+V + +KNRD+ D
Sbjct: 3591 GAPAVGGKVKKKKKNRDKKRD 3611
>AE013599-723|AAM71084.1| 5113|Drosophila melanogaster CG10844-PD,
isoform D protein.
Length = 5113
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 245 GCPGRGGRVHQGRKNRDRXSD 183
G P GG+V + +KNRD+ D
Sbjct: 3578 GAPAVGGKVKKKKKNRDKKRD 3598
>AE013599-722|AAM71083.1| 5127|Drosophila melanogaster CG10844-PC,
isoform C protein.
Length = 5127
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 245 GCPGRGGRVHQGRKNRDRXSD 183
G P GG+V + +KNRD+ D
Sbjct: 3592 GAPAVGGKVKKKKKNRDKKRD 3612
>AE013599-721|AAM71082.1| 5113|Drosophila melanogaster CG10844-PB,
isoform B protein.
Length = 5113
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 245 GCPGRGGRVHQGRKNRDRXSD 183
G P GG+V + +KNRD+ D
Sbjct: 3578 GAPAVGGKVKKKKKNRDKKRD 3598
>AE013599-720|AAF59036.2| 5127|Drosophila melanogaster CG10844-PA,
isoform A protein.
Length = 5127
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 245 GCPGRGGRVHQGRKNRDRXSD 183
G P GG+V + +KNRD+ D
Sbjct: 3592 GAPAVGGKVKKKKKNRDKKRD 3612
>AE014298-836|AAF46116.2| 893|Drosophila melanogaster CG5921-PA,
isoform A protein.
Length = 893
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -3
Query: 218 HQGRKNRDRXSDGNY*XXRK-EGAAHEXTEAPSVGQXXTRK 99
HQ R NRDR DGN R+ G SVGQ R+
Sbjct: 495 HQQRHNRDRDRDGNGNVDRQLTGHNGNGGHRSSVGQVSHRQ 535
>AE014298-835|AAN09159.1| 944|Drosophila melanogaster CG5921-PB,
isoform B protein.
Length = 944
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -3
Query: 218 HQGRKNRDRXSDGNY*XXRK-EGAAHEXTEAPSVGQXXTRK 99
HQ R NRDR DGN R+ G SVGQ R+
Sbjct: 495 HQQRHNRDRDRDGNGNVDRQLTGHNGNGGHRSSVGQVSHRQ 535
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,821,615
Number of Sequences: 53049
Number of extensions: 121101
Number of successful extensions: 207
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 24,988,368
effective HSP length: 71
effective length of database: 21,221,889
effective search space used: 445659669
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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