Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13m05
         (192 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    24   2.4  
SPBC146.10 |mug57||meiotically upregulated gene Mug57|Schizosacc...    23   4.2  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    23   5.6  

>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 80  TRKYISRYEKKNXFGKNLTKNV 15
           +R Y+S+Y  +N F   LTK V
Sbjct: 336 SRLYVSKYAWENGFRDELTKQV 357


>SPBC146.10 |mug57||meiotically upregulated gene
           Mug57|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 62  CLYIFEYV*VSNIKRSVLXMXQRPVHI 142
           CL IF ++  ++   +VL   QRP+++
Sbjct: 6   CLNIFRFLYTTSFISAVLSFNQRPINM 32


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = -2

Query: 98  YSILKHTRKYISRYEKKNXFGKNLTKNV 15
           Y+ +   +K+I   ++KN   ++L+K++
Sbjct: 573 YNFISRLKKFIFMEKEKNGLSRSLSKSI 600


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 525,868
Number of Sequences: 5004
Number of extensions: 6058
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)