Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13m05
         (192 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   2.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    19   5.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    19   5.4  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 169  ENAPLPP 149
            ENAPLPP
Sbjct: 1106 ENAPLPP 1112


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -2

Query: 92  ILKHTRKYISRYEKKNXFGKNLTKNVI 12
           +L++  +Y++        G+N  KNV+
Sbjct: 427 LLRNRSEYLNHLRANVAEGRNQRKNVL 453


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 74  KYISRYEKKNXFGKNLTK 21
           K+IS+  KK    K++TK
Sbjct: 115 KFISKKIKKTMENKDITK 132



 Score = 18.2 bits (35), Expect = 9.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 99  IFDTQTYSKI 70
           IFDT TY  I
Sbjct: 497 IFDTYTYDTI 506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,852
Number of Sequences: 438
Number of extensions: 454
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 43
effective length of database: 127,509
effective search space used:  2550180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)