Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13m04
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66561-7|CAB54206.2|  419|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF304127-1|AAG50240.1|  419|Caenorhabditis elegans innexin protein.    30   1.3  
U41993-6|AAA83448.2|  313|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical pr...    28   5.4  

>Z66561-7|CAB54206.2|  419|Caenorhabditis elegans Hypothetical
           protein F08G12.10 protein.
          Length = 419

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -3

Query: 435 HNMYLFSLSNTFIYEKHICFYFVLI---ILTSCY*IRYDFQMLF 313
           H +    + N  I + +ICFYF LI   ++T+   I + FQ+LF
Sbjct: 255 HTVSCIMILNMIIEKLYICFYFWLIFVFVVTTAGMIHFAFQILF 298


>AF304127-1|AAG50240.1|  419|Caenorhabditis elegans innexin protein.
          Length = 419

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -3

Query: 435 HNMYLFSLSNTFIYEKHICFYFVLI---ILTSCY*IRYDFQMLF 313
           H +    + N  I + +ICFYF LI   ++T+   I + FQ+LF
Sbjct: 255 HTVSCIMILNMIIEKLYICFYFWLIFVFVVTTAGMIHFAFQILF 298


>U41993-6|AAA83448.2|  313|Caenorhabditis elegans Hypothetical
           protein F44A2.7 protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 465 YIFLIFRHFTHNMYLFSLSNTFIYEKHICFYFVLIILTSCY*IRYDFQMLFLY 307
           Y  + FR+ +   YLF    + IY  H CF F +  +   Y  RY F+ L  Y
Sbjct: 89  YCLVDFRNRSFGKYLFDKIQS-IYGDHNCFLFGVGTMWQWYEKRYGFKELSPY 140


>Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical
           protein R186.2a protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = -1

Query: 185 KIYNNFIDILCNIFTSILLVYVN*NIAFVIVFSYNFTFHFKYWHIIILSNNLVTSF 18
           KIY    +I+  IF +I L++ +  + F+I FS +   H  +   ++L+ +L+  F
Sbjct: 14  KIYEVINEIVYPIFLTITLIFHSVLLVFIIFFSPS---HLNFLKFLLLTTSLLDVF 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,669,801
Number of Sequences: 27780
Number of extensions: 207411
Number of successful extensions: 457
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)