Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13m03
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   2.4  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    25   3.2  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   4.2  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   4.2  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    24   7.3  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    24   9.7  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    24   9.7  

>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 178 GNNGGKHCSFSPVVLREFNGRKHYIKVDCRRH 83
           G++    C    +V+   NGR+ Y++   RRH
Sbjct: 485 GHHKNPKCRAKKLVVESRNGRREYVQDAVRRH 516


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 205 HDWDQKPSHAKNGSAYDVNY*GSEK 279
           HD  ++PSH K+ SA  ++   S K
Sbjct: 229 HDHGERPSHVKDASAQHIDLLSSTK 253


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 82  DSTNSVRHYISLSKTDNCCSSI 17
           DS+NS  +  S+   DNCC  I
Sbjct: 99  DSSNSHHNNESICNNDNCCREI 120


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 154 SFSPVVLREFNG--RKHYIKVDCRRHDSTNSVRHYISLSKTDNCCSSIHSG 8
           S+S V+    N   R++ IKV  +RH        Y+++ K   C  S H G
Sbjct: 109 SYSTVLTATENSTKREYAIKVLDKRHIIKEKKEKYVNIEKEALCILSKHPG 159


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 266 RAVKNPMILKSQ*LLT 313
           RAVKNPMIL+ +  LT
Sbjct: 12  RAVKNPMILEKERQLT 27


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 145 PVVLREFNGRKHYIKVDCRRHDSTNSVRHYISL 47
           PV+L +    K+  +VD    D   + RH ISL
Sbjct: 541 PVLLHKMKNAKNSPRVDRINEDCILAARHLISL 573


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 10/47 (21%), Positives = 26/47 (55%)
 Frame = -2

Query: 381 SYRQIVDQ*IDKVYQVLICIVYLVRSYCDLRIMGFFTALIVNIVGGA 241
           ++   + Q I+K + ++  +V ++RS    ++     A++VN++  A
Sbjct: 234 TFESHIAQDINKRFDLIKLLVQIIRSDTKTKVYRLVLAILVNLIDKA 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,571,397
Number of Sequences: 5004
Number of extensions: 30357
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)