Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13m02
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 91 1e-19
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 65 7e-12
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 46 4e-06
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 42 6e-05
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 33 0.036
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 31 0.15
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 28 1.0
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 27 1.8
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 2.4
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 27 3.2
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar... 26 5.5
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 25 7.3
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 9.7
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 9.7
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 25 9.7
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 91.1 bits (216), Expect = 1e-19
Identities = 34/88 (38%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Frame = -2
Query: 620 CKFLHDKKHVAICRKFLKGICHE-DTCLLSHDITSEKMPTCYFYLKGMCTKENCPYLHVK 444
C+F+H+ IC KFL G C++ + C LSH++ ++P C ++L G C NC Y+H+
Sbjct: 224 CRFVHEPTRKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIH 283
Query: 443 LNKNSKLCSDFLK-GYCERGTKCEYRHV 363
++N+ +C +F K G+CE GT C+ +H+
Sbjct: 284 YSENAPICFEFAKYGFCELGTSCKNQHI 311
Score = 38.3 bits (85), Expect = 0.001
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = -2
Query: 650 GKCIRPIKGNCKFLHDKKHVAICRKFLKGICHEDTCLLSHDITSEKMPTCYFYLK-GMC- 477
G+C + N D + + CR FL G C+ C H SE P C+ + K G C
Sbjct: 242 GRCNKAEDCNLSHELDPRRIPACRYFLLGKCNNPNCRYVHIHYSENAPICFEFAKYGFCE 301
Query: 476 TKENCPYLHV 447
+C H+
Sbjct: 302 LGTSCKNQHI 311
>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 170
Score = 65.3 bits (152), Expect = 7e-12
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Frame = -2
Query: 653 FGKCIRPIKGNCKFLHDKKHVAICRKFLKGICHE-DTCLLSHDITSEKMPTCYFYL-KGM 480
FG+ GN + K +C+ +L+G+C + + C H+ +KMP C+FY +G
Sbjct: 31 FGRSALLNSGNGRDSGSKMGSVVCKHWLRGLCKKGEQCDFLHEYNLKKMPPCHFYAERGW 90
Query: 479 CTK-ENCPYLHVKLNKNSKLCSDFLKGYCERGTKCEYRHV 363
C+ E C YLH+ +K +C+ + G+C G C +HV
Sbjct: 91 CSNGEECLYLHLDPSKQVGVCAWYNMGFCPLGPICRGKHV 130
Score = 39.1 bits (87), Expect = 6e-04
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -2
Query: 503 CYFYLKGMCTK-ENCPYLHVKLNKNSKLCSDFL-KGYCERGTKCEYRHVNITNQ 348
C +L+G+C K E C +LH K C + +G+C G +C Y H++ + Q
Sbjct: 54 CKHWLRGLCKKGEQCDFLHEYNLKKMPPCHFYAERGWCSNGEECLYLHLDPSKQ 107
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 46.4 bits (105), Expect = 4e-06
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 503 CYFYLKGMCTK-ENCPYLHVKLNKNSKLCSDFLKGYCERGTKCEYRH 366
C F+ G CT ENCP+ H L +C FLKG C+ G KC H
Sbjct: 47 CKFFRNGTCTAGENCPFSH-SLETERPICKYFLKGNCKFGPKCALSH 92
Score = 33.1 bits (72), Expect = 0.036
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -2
Query: 599 KHVAICRKFLKGICHE-DTCLLSHDITSEKMPTCYFYLKGMC 477
+HV C+ F G C + C SH + +E+ P C ++LKG C
Sbjct: 43 QHVP-CKFFRNGTCTAGENCPFSHSLETER-PICKYFLKGNC 82
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 42.3 bits (95), Expect = 6e-05
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -2
Query: 503 CYFYLKGMCTK-ENCPYLH-VKLNKNSKLCSDFLKGYCERGTKCEYRHV 363
C F+ +G CT +NC + H ++L +C F KG C+ G+KC HV
Sbjct: 41 CKFFRQGTCTSGKNCIFSHDLELATEKTICKYFQKGNCKFGSKCALEHV 89
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 33.1 bits (72), Expect = 0.036
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 458 YLHVKLNKNSKLCSDFLKGYCERGTKCEYRH 366
Y N S C F +G C G+KCEY H
Sbjct: 105 YTKADKNPGSFFCLYFARGMCSEGSKCEYLH 135
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -2
Query: 455 LHVKLNKNSKLCSDFLKGYCERGTKCEYRHVNITNQTKKRLMRTK 321
LH L + CSD+L C EY+HVN + +R K
Sbjct: 695 LHTLLVRFRNHCSDYLSDLCRTAVLKEYKHVNEDTEDVDDTVRVK 739
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = -2
Query: 383 KCEYRHVNITNQTKKRLMRTKQITLLKVKNQHTEKPNKNESVEESQNERNMDCRYYR 213
+C ++ IT T KR+ R Q+ ++ Q+ KP K ++V+ +++E D YY+
Sbjct: 899 RCFFKTEFIT--TLKRINRNIQV-IVGPTIQYCRKPGKVQTVKTAKDETTKDYDYYK 952
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +1
Query: 331 INRFFV*LVIFTCLYSHFVPLSQYPLRKSEHSLEFLFNFTCK*GQFSLVHIPL 489
I RF + L+ F C H + + LRK S+ F C F + +P+
Sbjct: 716 ILRFLLLLLAFLCFAMHILLTPEATLRKWASSIYLSFRLECVFISFLIFSVPI 768
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 581 DKWPHVFYHAKIYNFLLLVVCISQI 655
+KWP +F H+ + FLLL+ IS +
Sbjct: 776 EKWPSLFSHSFLSMFLLLLDSISPL 800
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 302 LLTMLFVLSSSIVFLFDW*YLHV 370
+++ LFV S + FLFD YLH+
Sbjct: 1019 IMSTLFVFSRAFPFLFDLSYLHL 1041
>SPAC16E8.17c |||succinate-CoA ligase alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 173 GVIKPIRCKLGNLPSFI 123
G+I+P +CK+G +PS I
Sbjct: 159 GIIRPGQCKIGIMPSHI 175
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -2
Query: 425 LCSDF-LKGYCERGTKCEYRHV 363
+C D+ L GYC G C++ H+
Sbjct: 189 VCKDYKLTGYCGYGDTCKFLHM 210
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 479 CTKENCPYLHVKLNKNSKLCSDFLKGYCERGTKCEYRH 366
C K N + K+N LCSD LK C +K +H
Sbjct: 1384 CLKNNIEIIPDKINS---LCSDCLKNPCATISKAVTQH 1418
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 524 LYREIIDKYPHDKYLLKICDKWPHV 598
+Y + + ++ DKY L I KWP V
Sbjct: 439 VYAKSLKEFWLDKYRLSILQKWPAV 463
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -2
Query: 248 QNERNMDCRYYRDIKPNFEDTKADCGVIKPIRCKLGNLPS 129
+N +++ YY + N T AD G+I + LPS
Sbjct: 37 KNAKSLHAFYYHGTRLNMNMTCADYGIIHDSAVHIAPLPS 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,541,051
Number of Sequences: 5004
Number of extensions: 51924
Number of successful extensions: 190
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -