Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13m02
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 125 3e-29
06_03_1121 + 27767707-27768065,27768612-27769034,27770013-277701... 62 3e-10
01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716... 58 8e-09
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 37 0.012
05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889 36 0.022
06_02_0136 + 12195422-12195435,12196047-12196122,12196896-121977... 36 0.029
09_03_0048 + 11880848-11880952,11881030-11881312,11882667-118827... 36 0.038
01_01_0650 - 4948852-4950012 34 0.087
03_05_0799 + 27809301-27811550 34 0.12
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 33 0.20
07_01_1143 - 10711023-10711884,10713603-10713826,10714253-107145... 33 0.20
06_01_0493 - 3536207-3537056,3537603-3537826,3538234-3538503,353... 33 0.20
04_04_1500 + 34010819-34011016,34013267-34013308,34014195-340142... 33 0.27
12_02_0803 + 23318429-23318552,23318688-23319877,23320724-233215... 32 0.35
05_02_0028 - 5764980-5766374 32 0.47
06_03_1309 + 29223197-29223240,29223358-29223592,29223695-292237... 31 0.61
02_01_0703 + 5251901-5251950,5252783-5253554 31 0.61
01_06_1254 + 35761046-35761162,35761332-35761416,35761877-357620... 31 0.61
02_05_1332 + 35758657-35758728,35758959-35760689 31 0.81
07_03_1050 - 23570785-23570824,23570938-23571004,23571114-235711... 31 1.1
06_03_0766 - 24425486-24426245,24430766-24430855,24430951-244310... 31 1.1
01_06_1805 - 39999987-40000169,40000648-40000974,40001724-400020... 30 1.9
07_01_0056 + 428297-428332,428574-430127,430209-430274 29 3.3
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002... 29 3.3
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 29 3.3
01_01_1096 - 8659091-8659459,8660730-8661050,8661416-8661694,866... 29 3.3
07_01_0281 - 2067696-2068862 29 4.3
06_03_0246 + 18672704-18673111,18674069-18674164,18674362-186745... 29 4.3
04_04_1151 - 31284094-31284204,31284375-31284434,31284518-312845... 29 4.3
01_06_1814 + 40061080-40061395,40062243-40062641,40062758-40062864 29 4.3
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 29 4.3
09_02_0357 + 7788946-7789326,7789620-7789997 28 7.6
04_04_0040 + 22322839-22324173 28 7.6
>06_03_0867 + 25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 125 bits (302), Expect = 3e-29
Identities = 47/97 (48%), Positives = 68/97 (70%)
Frame = -2
Query: 656 KFGKCIRPIKGNCKFLHDKKHVAICRKFLKGICHEDTCLLSHDITSEKMPTCYFYLKGMC 477
+FG+C +P +G C ++HD+ V IC KFLKG+C +C L+H + E+MP C ++L+G+C
Sbjct: 1840 RFGECKKP-RGKCPYIHDRAKVTICTKFLKGLCSNTSCKLTHKVLPERMPDCSYFLRGLC 1898
Query: 476 TKENCPYLHVKLNKNSKLCSDFLKGYCERGTKCEYRH 366
T CPY HVK+N N+ +C DFLKGYC G +C +H
Sbjct: 1899 TNIACPYRHVKVNLNAPVCEDFLKGYCAYGDECHKKH 1935
Score = 36.3 bits (80), Expect = 0.022
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -2
Query: 521 SEKMPTCYFYLK-GMCTKEN--CPYLHVKLNKNSKLCSDFLKGYCERGTKCEYRH 366
++K C F+ + G C K CPY+H + +C+ FLKG C T C+ H
Sbjct: 1829 AKKQQYCQFFTRFGECKKPRGKCPYIHDRAKVT--ICTKFLKGLCS-NTSCKLTH 1880
>06_03_1121 +
27767707-27768065,27768612-27769034,27770013-27770175,
27770271-27770381,27770895-27770963,27771117-27771203,
27771967-27772752
Length = 665
Score = 62.5 bits (145), Expect = 3e-10
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Frame = -2
Query: 587 ICRKFLKGICHE-DTCLLSHDITSEKMPTCYFYLK-GMCTKENCPYLHVKLNKNSKLCSD 414
+CR +L+G+C + + C H +MP C F+ G C + +C Y H + K C+
Sbjct: 63 VCRHWLRGLCMKGEACGFLHQFDKARMPVCRFFRDFGECREPDCAYKHSY--DDVKECNM 120
Query: 413 FLKGYCERGTKCEYRHVNITN---QTKKRLMRTKQITLLKVKNQHTEKPNKNESVEESQN 243
+ G+C G C Y+HV + ++ L + QI NQH N N+ E Q+
Sbjct: 121 YKMGFCPNGPNCRYKHVKLPGPPPPVEEVLQKILQIRSFNKFNQHRHN-NYNQQGERPQH 179
>01_05_0420 +
21969797-21970939,21971307-21971369,21971488-21971616,
21972241-21972291,21972669-21972809,21972922-21973122,
21973201-21973419,21973582-21973700,21973772-21973862,
21975864-21975965,21976291-21976315,21976522-21976592
Length = 784
Score = 57.6 bits (133), Expect = 8e-09
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Frame = -2
Query: 599 KHVAICRKFLKGICHE-DTCLLSHDITS-EKMPTCYFYLKGMCTK-ENCPYLHVKLNKNS 429
K V +C +L G C + + C SHD T K C Y +G C K ++CPY H +L+K
Sbjct: 430 KVVKVCHFYLHGKCQQGNLCKFSHDTTPLTKSKPCTHYARGSCLKGDDCPYDH-ELSKYP 488
Query: 428 KLCSDFLK-GYCERGTKCEYRHV 363
C +F++ G C RG KC++ HV
Sbjct: 489 --CHNFMENGMCIRGDKCKFSHV 509
Score = 41.1 bits (92), Expect = 8e-04
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = -2
Query: 527 ITSEKMPTCYFYLKGMCTKEN-CPYLH--VKLNKNSKLCSDFLKGYCERGTKCEYRH 366
I + + C+FYL G C + N C + H L K SK C+ + +G C +G C Y H
Sbjct: 427 IKPKVVKVCHFYLHGKCQQGNLCKFSHDTTPLTK-SKPCTHYARGSCLKGDDCPYDH 482
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 428 KLCSDFLKGYCERGTKCEYRHVNITNQTKKR 336
K+C +L G C++G C++ H + T TK +
Sbjct: 433 KVCHFYLHGKCQQGNLCKFSH-DTTPLTKSK 462
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 37.1 bits (82), Expect = 0.012
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = -2
Query: 554 EDTCLLSHDITSEKMP-TCYFYLKGMCTKE--NCPYLHVK-LNKNSKLCSDFLKGYCERG 387
+++ L S + K+ C + +G C++ C +LH L + +C DFL+G C+R
Sbjct: 168 QESLLRSIGVEDPKVKMVCRDFTRGRCSRSANECRFLHHSPLEDCAIVCQDFLRGRCDR- 226
Query: 386 TKCEYRHV 363
C Y HV
Sbjct: 227 KSCRYSHV 234
Score = 36.7 bits (81), Expect = 0.016
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = -2
Query: 611 LHDKKHVAICRKFLKGICHEDT--C-LLSHDITSEKMPTCYFYLKGMCTKENCPYLHV 447
+ D K +CR F +G C C L H + C +L+G C +++C Y HV
Sbjct: 177 VEDPKVKMVCRDFTRGRCSRSANECRFLHHSPLEDCAIVCQDFLRGRCDRKSCRYSHV 234
Score = 35.5 bits (78), Expect = 0.038
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 20/121 (16%)
Frame = -2
Query: 650 GKCIRPIKGNCKFLHD---KKHVAICRKFLKGICHEDTCLLSH-----------DITSEK 513
G+C R C+FLH + +C+ FL+G C +C SH DI +
Sbjct: 192 GRCSRSAN-ECRFLHHSPLEDCAIVCQDFLRGRCDRKSCRYSHVMAHPMPPPMRDIPMQY 250
Query: 512 MPTCYFY------LKGMCTKENCPYLHVKLNKNSKLCSDFLKGYCERGTKCEYRHVNITN 351
Y + M + P N ++C D+LK C R C + H ++ N
Sbjct: 251 PDMVYMPPPAPLGVPMMMPPPSAPAAFSGNNYGVEVCRDYLKNMCNR-ESCRFAHPDLNN 309
Query: 350 Q 348
+
Sbjct: 310 E 310
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Frame = -2
Query: 503 CYFYLKGMCTKEN--CPYLH----VKLNKNSKL--CSDFLKGYCERGTKCEYRH 366
C +L+ C + + C Y H V ++++SK+ C+D L+ C RG C Y H
Sbjct: 109 CRDFLRDRCARADIECKYAHPHPTVAVDRDSKVTACADSLRNNCFRGRTCRYYH 162
Score = 31.1 bits (67), Expect = 0.81
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 503 CYFYLKGMCTKENCPYLHVKLNKNS 429
C YLK MC +E+C + H LN +
Sbjct: 287 CRDYLKNMCNRESCRFAHPDLNNEA 311
>05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889
Length = 493
Score = 36.3 bits (80), Expect = 0.022
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -2
Query: 503 CYFYLKGMCTK-ENCPYLHVKLNKN 432
CYFY C+K +NCPYLH L N
Sbjct: 97 CYFYYNSHCSKGDNCPYLHEPLTSN 121
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 19/70 (27%)
Frame = -2
Query: 503 CYFYLKGMCTKENCPYLH---VKLNKNS------KLCSDFLK----------GYCERGTK 381
C+++ KG C +C + H LNK LCS +K +C +G
Sbjct: 51 CWYWFKGNCVNPSCTFRHPPLENLNKTKSLADPLSLCSTSVKAANPCYFYYNSHCSKGDN 110
Query: 380 CEYRHVNITN 351
C Y H +T+
Sbjct: 111 CPYLHEPLTS 120
>06_02_0136 +
12195422-12195435,12196047-12196122,12196896-12197707,
12197941-12198010,12199469-12199557,12199633-12199666
Length = 364
Score = 35.9 bits (79), Expect = 0.029
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = -2
Query: 458 YLHVKLNKNSKLCSDFLKGYCERGTKCEYRHVNIT 354
+LH+ + + ++C+ + KG C G++C Y HV ++
Sbjct: 20 FLHILVLRTLQVCTFYQKGSCSYGSRCRYDHVKVS 54
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 533 HDITSEKMPTCYFYLKGMCT-KENCPYLHVKLNKN 432
H + + C FY KG C+ C Y HVK+++N
Sbjct: 22 HILVLRTLQVCTFYQKGSCSYGSRCRYDHVKVSRN 56
>09_03_0048 +
11880848-11880952,11881030-11881312,11882667-11882770,
11883998-11884416,11884698-11884998,11885136-11885232,
11885719-11885864,11885975-11886103
Length = 527
Score = 35.5 bits (78), Expect = 0.038
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Frame = -2
Query: 503 CY-FYLKGMCTK-ENCPYLH---VKLNKNSKLCSDFL-KGYCERGTKCEYRH 366
C+ F G C + C Y H + + N +C DFL KG CE+G +C + H
Sbjct: 238 CFKFTSSGSCPRGSKCNYRHDEEAREHYNRNVCFDFLNKGKCEKGPECRFAH 289
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -2
Query: 431 SKLCSDFLK-GYCERGTKCEYRH 366
++LC F G C RG+KC YRH
Sbjct: 235 NRLCFKFTSSGSCPRGSKCNYRH 257
>01_01_0650 - 4948852-4950012
Length = 386
Score = 34.3 bits (75), Expect = 0.087
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 446 KLNKNSKLCSDFLKGYCERGTKCEYRH 366
K + + C DF KG C+RG CEY H
Sbjct: 114 KYHYSGTACPDFRKGGCKRGDACEYAH 140
>03_05_0799 + 27809301-27811550
Length = 749
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 422 CSDFLKGYCERGTKCEYRH 366
C DF KG C RG CEY H
Sbjct: 312 CPDFRKGVCRRGDMCEYAH 330
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 33.1 bits (72), Expect = 0.20
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 422 CSDFLKGYCERGTKCEYRHVNIT 354
C DF+KG C RG C Y H + T
Sbjct: 320 CHDFVKGRCSRGANCRYVHDDST 342
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 422 CSDFLKGYCERGTKCEYRH 366
C DF+ G C RG+ C + H
Sbjct: 235 CRDFVAGRCRRGSNCRFPH 253
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 452 HVKLNKNSKLCSDFLKGYCERGTKCEYRH 366
H + NKN C F G C RG C Y H
Sbjct: 371 HRRTNKNP--CKFFANGGCRRGQNCPYLH 397
Score = 29.1 bits (62), Expect = 3.3
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Frame = -2
Query: 503 CYFYLKGMCTK-ENCPYLHVKLNKNSK-LCSDFLKGYCERGTKCEYRHVNITNQTKKRLM 330
C F+ G C + +NCPYLH + +++ L + GY G +++ + Q
Sbjct: 379 CKFFANGGCRRGQNCPYLHEEASQSQMGLGAPDEPGY-TGGPTTRGDYLSWSEQNNSVQA 437
Query: 329 RTKQITLLKVKNQHTEKPNKNESVEESQNERNMDCRYYR-DIKPNFEDTKADCGVIKPIR 153
+ ++ +N + +N+S E++N + D + I P +D G KP
Sbjct: 438 SSHVLSRDDRENPVPQGTGRNDSRYENKNRHSKDAGSSQYQIFP--QDDFGSVGQNKP-E 494
Query: 152 CKLGNLPSFI 123
LP FI
Sbjct: 495 IAASQLPQFI 504
>07_01_1143 -
10711023-10711884,10713603-10713826,10714253-10714522,
10715071-10715175
Length = 486
Score = 33.1 bits (72), Expect = 0.20
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Frame = -2
Query: 452 HVKLNKNSKLCSDFLKGYCERGTKCEYRHV-----NITNQT-KKRLMRTKQITLLKVKNQ 291
+ K N+ + +CS +++G C RG +C YRH ++ Q K R LK+ ++
Sbjct: 154 YYKRNR-AHVCSFYVRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLSK 212
Query: 290 HTEKPNKNESVEESQNERNMDCRYYRDIKPNFEDTKADCGVIKPIRCKLGNLPSFIQF 117
E P+ +ES + R + + D G I+ IR L +F+ +
Sbjct: 213 AGEMPSLTPPDDESIRTLYIGGLDSRVTEQDLRDQFYAHGEIETIRMVLQRACAFVTY 270
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -2
Query: 503 CYFYLKGMCTK-ENCPYLH 450
C FY++G CT+ CPY H
Sbjct: 163 CSFYVRGECTRGAECPYRH 181
>06_01_0493 -
3536207-3537056,3537603-3537826,3538234-3538503,
3539042-3539146
Length = 482
Score = 33.1 bits (72), Expect = 0.20
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 6/118 (5%)
Frame = -2
Query: 452 HVKLNKNSKLCSDFLKGYCERGTKCEYRHV-----NITNQT-KKRLMRTKQITLLKVKNQ 291
+ K N+ + +CS +++G C RG +C YRH ++ Q K R LK+ +
Sbjct: 154 YYKRNR-AHVCSFYVRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLGK 212
Query: 290 HTEKPNKNESVEESQNERNMDCRYYRDIKPNFEDTKADCGVIKPIRCKLGNLPSFIQF 117
E P+ +ES + R + + D G I+ IR L +F+ +
Sbjct: 213 AGEMPSLTPPDDESIRTLYIGGLNNRITEQDLRDQFYAHGEIESIRMVLQRACAFVTY 270
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -2
Query: 503 CYFYLKGMCTK-ENCPYLH 450
C FY++G CT+ CPY H
Sbjct: 163 CSFYVRGECTRGAECPYRH 181
>04_04_1500 +
34010819-34011016,34013267-34013308,34014195-34014204,
34014526-34014586,34014621-34014678,34015266-34015412,
34015643-34016205,34018942-34019728
Length = 621
Score = 32.7 bits (71), Expect = 0.27
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 440 NKNSKLCSDFLKGYCERGTKCEYRH 366
N +KLC +F+KG C G +C + H
Sbjct: 587 NYKTKLCENFVKGTCTFGDRCHFAH 611
>12_02_0803 +
23318429-23318552,23318688-23319877,23320724-23321528,
23321938-23322417,23322535-23322815,23323207-23323302,
23323423-23323548,23324100-23325890
Length = 1630
Score = 32.3 bits (70), Expect = 0.35
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 509 PTCYFYLKGMCTKENCPYLHVK 444
P C F L+G C E CP+ HV+
Sbjct: 827 PFCMFELRGKCNDEECPWQHVE 848
>05_02_0028 - 5764980-5766374
Length = 464
Score = 31.9 bits (69), Expect = 0.47
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 422 CSDFLKGYCERGTKCEYRH 366
C DF KG C+RG CE+ H
Sbjct: 185 CPDFRKGGCKRGDACEFAH 203
>06_03_1309 +
29223197-29223240,29223358-29223592,29223695-29223783,
29223870-29223968,29224065-29224158,29224297-29224514,
29224861-29224967,29225298-29225472,29225596-29225743,
29226548-29226596,29228016-29228162,29229990-29229996,
29230417-29230482,29230773-29231991,29232073-29233149,
29233226-29233355,29233519-29233617,29233817-29233878,
29234429-29234533
Length = 1389
Score = 31.5 bits (68), Expect = 0.61
Identities = 17/105 (16%), Positives = 46/105 (43%)
Frame = -2
Query: 443 LNKNSKLCSDFLKGYCERGTKCEYRHVNITNQTKKRLMRTKQITLLKVKNQHTEKPNKNE 264
+++ ++C +F +G C+ G +C Y H + Q +++ + ++ ++P+
Sbjct: 1 MSRRQEICRNFQRGSCKYGAQCRYLHASPHQQQQQQQAKPNPFG-FGTGSRQQQQPSFGS 59
Query: 263 SVEESQNERNMDCRYYRDIKPNFEDTKADCGVIKPIRCKLGNLPS 129
++ Q ++ + ++ ++ G KP + K PS
Sbjct: 60 QFQQQQQQQQKPNPFGFGVQGANAQSRNAPGPAKPFQNKWVRDPS 104
>02_01_0703 + 5251901-5251950,5252783-5253554
Length = 273
Score = 31.5 bits (68), Expect = 0.61
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 440 NKNSKLCSDFLKGYCERGTKCEYRH 366
N +KLC +F KG C G +C + H
Sbjct: 238 NFKTKLCENFTKGSCTFGDRCHFAH 262
>01_06_1254 +
35761046-35761162,35761332-35761416,35761877-35762017,
35762118-35762206,35762519-35762701,35763509-35763697,
35763808-35763938,35764023-35764125,35765123-35765308
Length = 407
Score = 31.5 bits (68), Expect = 0.61
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = -2
Query: 461 PYLHVKLNKNSKLCSDFLKGYCERGTKCEYRH-VNITNQTKKRLMRT--KQITLLKVKNQ 291
P + V ++ S +C F G C++G KC++ H +N+ + +K + T + ++ +Q
Sbjct: 63 PKVPVGVDPKSIVCEFFKVGQCQKGFKCKFSHDLNVQRKGEKIDIYTDKRDAETMEDWDQ 122
Query: 290 HT-EKPNKNESVEESQNE 240
T EK ++ E QN+
Sbjct: 123 ETLEKVVASKGAEYQQNK 140
>02_05_1332 + 35758657-35758728,35758959-35760689
Length = 600
Score = 31.1 bits (67), Expect = 0.81
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -2
Query: 524 TSEKMPTCYFYLKGMCTK-ENCPYLHV 447
T+++ CY++ KGMC K + C +LH+
Sbjct: 61 TAKQGVPCYYFQKGMCVKGDRCAFLHL 87
>07_03_1050 -
23570785-23570824,23570938-23571004,23571114-23571196,
23572028-23572201,23572268-23572471,23572570-23573300
Length = 432
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 452 HVKLNKNSKLCS-DFLKGYCERGTKCEYRHVNI 357
H +SK C F +GYC++G C++ H ++
Sbjct: 128 HSSSKSSSKPCHFHFFRGYCKKGVNCQFFHGSV 160
>06_03_0766 -
24425486-24426245,24430766-24430855,24430951-24431070,
24431568-24431746,24432046-24432231,24432454-24432547,
24432679-24432743,24433652-24433987
Length = 609
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 440 NKNSKLCSDFLKGYCERGTKCEYRH 366
N +KLC +F KG C G +C + H
Sbjct: 573 NFKTKLCENFNKGSCTFGDRCHFAH 597
>01_06_1805 -
39999987-40000169,40000648-40000974,40001724-40002017,
40002112-40002231,40002714-40002776,40003150-40003310,
40003864-40004035
Length = 439
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = -2
Query: 509 PTCYFY----LKGMCTKENCPYLHVKLNKNSKLCSDFLK-GYCERGTKCEYRHVNITN 351
PTC F+ G+ + L L + K C+ +LK G C+ G C++ H + N
Sbjct: 144 PTCKFHHPREKAGIAGRVQLNTLGYPLRPSEKECAYYLKTGQCKYGNTCKFHHPELFN 201
>07_01_0056 + 428297-428332,428574-430127,430209-430274
Length = 551
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/77 (23%), Positives = 38/77 (49%)
Frame = -2
Query: 431 SKLCSDFLKGYCERGTKCEYRHVNITNQTKKRLMRTKQITLLKVKNQHTEKPNKNESVEE 252
+K+ D+ G+ R + V I ++ +K + T + + +++ + + KNESVE+
Sbjct: 174 NKIVQDYDNGHAHRAENV--KSVEIADRDEKAMADTSKGSSIEISHSIIDH-EKNESVEK 230
Query: 251 SQNERNMDCRYYRDIKP 201
++ D +DI P
Sbjct: 231 MESAPTKDADETQDILP 247
>03_06_0523 +
34499533-34499705,34499808-34499917,34500037-34500224,
34500984-34501451
Length = 312
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 425 LCSDFLKGYCERGTKCEYRH 366
+C F KG C RG C Y H
Sbjct: 135 VCYAFQKGECNRGASCRYSH 154
>03_02_0740 - 10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 29.1 bits (62), Expect = 3.3
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Frame = -2
Query: 611 LHDKKHVAICRKFLKGICHEDTCLLSHDITSEKMPTCYF---YLKGMCTKENCPYLHVKL 441
L +K V++ +L + HED+ + E M YLKG ++CP+ +K
Sbjct: 1033 LEKRKQVSMKYSWLMLLEHEDSYRYIPQLGDEVMYLRQGHEEYLKGSRQLDDCPWNRIKG 1092
Query: 440 NKNSKLCS----DFLKGYCERGTKCEYRHVNITNQTKKRLMRTKQITLLKVKN 294
K+ +LC D+ + G C + + T + RT ITL ++ N
Sbjct: 1093 LKDVELCKIQGLDYTT-FRGSGESCCKLTIEFIDDTSRGFGRTFMITLPELVN 1144
>01_01_1096 -
8659091-8659459,8660730-8661050,8661416-8661694,
8661781-8661897,8662142-8662210,8663204-8663397,
8663552-8663633
Length = 476
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 19/67 (28%)
Frame = -2
Query: 509 PTCYFYLK-GMCT-KENCPYLHVK---------LNKNS-------KLCSDFLK-GYCERG 387
P C +Y+K G C NC Y H K LN + K CS ++K G C+ G
Sbjct: 112 PICEYYMKTGTCKFGTNCKYHHPKQDGAVLPVMLNNSGFPIRLGEKECSYYMKTGQCKFG 171
Query: 386 TKCEYRH 366
T C++ H
Sbjct: 172 TTCKFHH 178
>07_01_0281 - 2067696-2068862
Length = 388
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 425 LCSDFLKGYCERGTKCEYRH 366
LCS + KG C G C Y H
Sbjct: 326 LCSKWRKGRCHNGAACRYSH 345
>06_03_0246 +
18672704-18673111,18674069-18674164,18674362-18674571,
18675780-18675851,18675898-18675945
Length = 277
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -2
Query: 458 YLHVKLNKNSKLCSDFL-KGYCERGTKCEYRHVN 360
+L + L + LCS ++ +G C+ G+ C++ H N
Sbjct: 161 FLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHPN 194
>04_04_1151 -
31284094-31284204,31284375-31284434,31284518-31284595,
31284688-31284812,31284898-31285906,31286513-31286920,
31287323-31287400,31287524-31287934
Length = 759
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -2
Query: 521 SEKMPTCYFYLKGMCTKENCPYLHVKLNKNSKLCSDFLKGYC-ERGTKCEYRHVNITNQT 345
SE P L K P + K +LC D + C E G+ EY + + N+T
Sbjct: 395 SEGAPRISLPLLWQAAKVYTPIIFELFRKEYELCMDCMAYSCGEFGSLSEYM-ITVKNKT 453
Query: 344 KKRLMR 327
K +L+R
Sbjct: 454 KDQLVR 459
>01_06_1814 + 40061080-40061395,40062243-40062641,40062758-40062864
Length = 273
Score = 28.7 bits (61), Expect = 4.3
Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 6/117 (5%)
Frame = -2
Query: 602 KKHVAICRKFLKGICHEDTCLLSHDITSEKMPTCYFYLKGMCTKENCPYLHVKL--NKNS 429
K+ + F +C + L+ D T+E P F L CT E CP L K+
Sbjct: 130 KRKFGLVSDFTTEVCPKRKFGLASDCTTEVCPKRKFGLVSDCTTEVCPKRKFGLYAGKSL 189
Query: 428 KLCSDFLKGYCERGTKCEYRHVNITNQTKKRLMRTKQITLLKVK----NQHTEKPNK 270
K + G R T + IT K+RL K+K N T++P K
Sbjct: 190 KKSKNSEDGVLSR-TGADILSDEITLGLKRRLKLDDANPAKKMKQIECNTETQQPVK 245
>01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = -2
Query: 503 CYFYLKGMCTK-ENCPYLHVKLNKNSKLCSDFLK-GYCERGTKCEYRH 366
C F+L G C + + C + H +C FL C G C + H
Sbjct: 986 CVFFLNGSCNRGDTCHFSH-SSRAPRPICKFFLTLQGCRNGNSCSFSH 1032
Score = 27.9 bits (59), Expect = 7.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 431 SKLCSDFLKGYCERGTKCEYRH 366
+++C FL G C RG C + H
Sbjct: 983 NEMCVFFLNGSCNRGDTCHFSH 1004
>09_02_0357 + 7788946-7789326,7789620-7789997
Length = 252
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -2
Query: 440 NKNSKLCSDFLKGYCERGTKCEYRH 366
N S LC + +G C G C Y H
Sbjct: 35 NHKSVLCMKWREGRCHNGVACRYAH 59
>04_04_0040 + 22322839-22324173
Length = 444
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -2
Query: 434 NSKLCSDFLKGYCERGTKCEYRHVNITNQTKKRLMRTKQITLLKVK 297
+S CSD C +KC Y + + + + ++ T+ TL K K
Sbjct: 151 SSASCSDLPTSKCTSASKCGYTYTYGDSSSTQGVLATETFTLAKSK 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,324,904
Number of Sequences: 37544
Number of extensions: 261769
Number of successful extensions: 680
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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