Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13m02
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 69 2e-12
U67957-1|AAB07587.2| 324|Caenorhabditis elegans Hypothetical pr... 45 6e-05
AC024826-3|AAP13746.1| 343|Caenorhabditis elegans Hypothetical ... 42 3e-04
AC024826-2|AAF60798.1| 413|Caenorhabditis elegans Hypothetical ... 42 3e-04
Z79695-4|CAB01969.3| 374|Caenorhabditis elegans Hypothetical pr... 37 0.015
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 36 0.034
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 33 0.24
U46674-4|AAA85756.1| 574|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z82261-4|CAB05147.1| 203|Caenorhabditis elegans Hypothetical pr... 31 0.96
Z74476-2|CAA98962.1| 200|Caenorhabditis elegans Hypothetical pr... 31 0.96
U41109-13|AAB37036.1| 264|Caenorhabditis elegans Posterior segr... 31 0.96
AB006208-1|BAA33854.1| 264|Caenorhabditis elegans cytoplasmic z... 31 0.96
Z77661-1|CAB01186.1| 341|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z82267-5|CAB05193.1| 203|Caenorhabditis elegans Hypothetical pr... 29 2.2
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 29 2.2
AL110495-2|CAB60410.1| 203|Caenorhabditis elegans Hypothetical ... 29 2.2
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF016418-9|AAK18904.1| 186|Caenorhabditis elegans Hypothetical ... 29 2.9
U29157-1|AAA68423.4| 675|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z82267-3|CAB05191.1| 186|Caenorhabditis elegans Hypothetical pr... 28 5.1
AL032655-2|CAB60457.1| 561|Caenorhabditis elegans Hypothetical ... 28 5.1
AF000265-7|AAB52941.1| 893|Caenorhabditis elegans Hypothetical ... 28 5.1
AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical ... 28 5.1
AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical... 28 6.8
AL117204-31|CAB55122.2| 727|Caenorhabditis elegans Hypothetical... 28 6.8
AL117204-11|CAB55126.1| 201|Caenorhabditis elegans Hypothetical... 28 6.8
AL117204-8|CAB55123.1| 205|Caenorhabditis elegans Hypothetical ... 28 6.8
AF045646-5|AAK29828.1| 225|Caenorhabditis elegans Hypothetical ... 28 6.8
AC024761-9|AAP13757.1| 279|Caenorhabditis elegans Hypothetical ... 28 6.8
Z99281-15|CAB16528.1| 199|Caenorhabditis elegans Hypothetical p... 27 8.9
U40797-8|AAL08029.1| 332|Caenorhabditis elegans Serpentine rece... 27 8.9
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 69.3 bits (162), Expect = 2e-12
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Frame = -2
Query: 635 PIKGNCKFLH-DKKHVAICRKFLKGICHE-DTCLLSHDITSEKMPTCYFYLK-GMCTKEN 465
P C H D + +C+ +L+G+C + D C H+ KMP C+F+ K C+
Sbjct: 64 PFGPTCPLRHIDGEKAVVCKHWLRGLCKKGDQCEFLHEYDLTKMPECFFFSKYSACSNRE 123
Query: 464 CPYLHVKLNKNSKLCSDFLKGYCERGTKCEYRH 366
CP+ H+ K C + +G+C G C++RH
Sbjct: 124 CPFRHIDPETKMKDCPWYDRGFCRHGPYCKHRH 156
Score = 44.8 bits (101), Expect = 6e-05
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = -2
Query: 605 DKKHVAICRKFLKGIC-HEDTCLLSHDITSEKMPTCYFYLKGMCTK-ENCPYLHVKLNKN 432
D+ A+CRK +C TC L H I EK C +L+G+C K + C +LH
Sbjct: 48 DRSGKAVCRKNKLKMCPFGPTCPLRH-IDGEKAVVCKHWLRGLCKKGDQCEFLHEYDLTK 106
Query: 431 SKLCSDFLKGYCERGTKCEYRHVNITNQTK 342
C F K +C +RH++ + K
Sbjct: 107 MPECFFFSKYSACSNRECPFRHIDPETKMK 136
>U67957-1|AAB07587.2| 324|Caenorhabditis elegans Hypothetical
protein K02H8.1 protein.
Length = 324
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Frame = -2
Query: 593 VAICRKFLKGIC--HEDTCLLSH-----DITSEKMPTCYFYLKGMCTKEN--CPYLH 450
V +CR+FL+G C + C +H D+ ++ CY +KG CT+EN C YLH
Sbjct: 41 VEVCREFLRGQCARSDQECKFAHPPPNVDVQQGRVTACYDSIKGRCTRENPKCKYLH 97
>AC024826-3|AAP13746.1| 343|Caenorhabditis elegans Hypothetical
protein Y55F3AM.6b protein.
Length = 343
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = -2
Query: 599 KHVAICRKFLKGICHE-DTCLLSHDITSEKMPTCYFYLKGMCT-KENCPYLHVKLNKNSK 426
+H CR F G C + +TC +HD+ + C+F L G C+ C +LH + +N +
Sbjct: 3 RHETDCRYFANGYCSKGNTCTFTHDVATRNENICHFNLVGKCSYGRACRFLHTR-PRNDE 61
Query: 425 LCS 417
L S
Sbjct: 62 LPS 64
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -2
Query: 503 CYFYLKGMCTKEN-CPYLHVKLNKNSKLCSDFLKGYCERGTKCEYRHVNITN 351
C ++ G C+K N C + H +N +C L G C G C + H N
Sbjct: 8 CRYFANGYCSKGNTCTFTHDVATRNENICHFNLVGKCSYGRACRFLHTRPRN 59
>AC024826-2|AAF60798.1| 413|Caenorhabditis elegans Hypothetical
protein Y55F3AM.6a protein.
Length = 413
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = -2
Query: 599 KHVAICRKFLKGICHE-DTCLLSHDITSEKMPTCYFYLKGMCT-KENCPYLHVKLNKNSK 426
+H CR F G C + +TC +HD+ + C+F L G C+ C +LH + +N +
Sbjct: 3 RHETDCRYFANGYCSKGNTCTFTHDVATRNENICHFNLVGKCSYGRACRFLHTR-PRNDE 61
Query: 425 LCS 417
L S
Sbjct: 62 LPS 64
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -2
Query: 503 CYFYLKGMCTKEN-CPYLHVKLNKNSKLCSDFLKGYCERGTKCEYRHVNITN 351
C ++ G C+K N C + H +N +C L G C G C + H N
Sbjct: 8 CRYFANGYCSKGNTCTFTHDVATRNENICHFNLVGKCSYGRACRFLHTRPRN 59
>Z79695-4|CAB01969.3| 374|Caenorhabditis elegans Hypothetical
protein F27D4.4a protein.
Length = 374
Score = 36.7 bits (81), Expect = 0.015
Identities = 21/88 (23%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Frame = -2
Query: 443 LNKNSKLCSDFLKGYCERGTKCEYRH-VNITNQTKKRLM--RTKQITLLKVKNQHTEKPN 273
++ S LC F +G C +G KC++ H + + +T K+ + ++++ + N++ +
Sbjct: 89 VDPKSLLCVFFKQGLCGKGAKCKFSHDLAVAQKTAKKNLYADSREVEKDEETNENWDSDK 148
Query: 272 KNESV-EESQNERNMD--CRYYRDIKPN 198
NE V ++++N+ +D C+Y+ + N
Sbjct: 149 LNEVVNKKNKNKHMIDIVCKYFLEAVEN 176
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 35.5 bits (78), Expect = 0.034
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 425 LCSDFLKGYCERGTKCEYRHVNITN 351
+CS F+KG C+RG +C YRH T+
Sbjct: 167 ICSFFVKGECKRGEECPYRHEKPTD 191
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 32.7 bits (71), Expect = 0.24
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 425 LCSDFLKGYCERGTKCEYRH 366
+C DFLK C RG++C++ H
Sbjct: 58 VCRDFLKNICNRGSRCKFYH 77
Score = 31.5 bits (68), Expect = 0.55
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Frame = -2
Query: 587 ICRKFLKGICHEDT-CLLSH-----DITSEKMPTCYFYLKGMCTKENCPYLH 450
+CR FLK IC+ + C H I+ C Y C ++NC ++H
Sbjct: 58 VCRDFLKNICNRGSRCKFYHPSEAPPISDHDYNFCIDYQNRGCQRDNCRFVH 109
>U46674-4|AAA85756.1| 574|Caenorhabditis elegans Hypothetical
protein T26A8.4 protein.
Length = 574
Score = 31.9 bits (69), Expect = 0.41
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = -2
Query: 503 CYFYLKGMCTK-ENCPYLHVKLN--KNSKLCSDFLKGYCERGTKCEYRH 366
C F+ +G C +NC Y H + + LC+ + +C++G +C H
Sbjct: 171 CKFFREGYCRDGDNCLYSHQAEDSLRRPVLCNFYANSFCKKGLQCLMLH 219
Score = 27.9 bits (59), Expect = 6.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 428 KLCSDFLKGYCERGTKCEYRH 366
++C F +GYC G C Y H
Sbjct: 169 QICKFFREGYCRDGDNCLYSH 189
>Z82261-4|CAB05147.1| 203|Caenorhabditis elegans Hypothetical
protein C35D6.4 protein.
Length = 203
Score = 30.7 bits (66), Expect = 0.96
Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -2
Query: 440 NKNSKLCSDF-LKGYCERGTKCEYRHVNITNQTKKRLMRTKQITL 309
N + LC++F G+C+ G +C++ H ++ + + + T+ IT+
Sbjct: 129 NYKTVLCNNFSTTGHCKYGIRCQFIHRSMDSTSSNQSNETENITI 173
>Z74476-2|CAA98962.1| 200|Caenorhabditis elegans Hypothetical
protein W05B10.2 protein.
Length = 200
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 446 KLNKNSKL-CSDFLKGYCERGTKCEYRH 366
K K SK C ++LKG C G KC + H
Sbjct: 130 KERKKSKFTCKNYLKGKCRFGDKCRFSH 157
>U41109-13|AAB37036.1| 264|Caenorhabditis elegans Posterior
segregation protein 1 protein.
Length = 264
Score = 30.7 bits (66), Expect = 0.96
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 425 LCSDF-LKGYCERGTKCEYRHVNITNQTKKRLMRTKQITLLKVKNQHTEKPNKNESVEES 249
LC F + G C+ GT+C++ H + K T K ++ N + V +
Sbjct: 146 LCDKFSMTGNCKYGTRCQFIHKIVDGNAAKLASGAHANTSSKSPARNAAAHNHSLFVPQG 205
Query: 248 QNERNMD 228
+R+MD
Sbjct: 206 STDRSMD 212
>AB006208-1|BAA33854.1| 264|Caenorhabditis elegans cytoplasmic
zinc-finger protein protein.
Length = 264
Score = 30.7 bits (66), Expect = 0.96
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -2
Query: 425 LCSDF-LKGYCERGTKCEYRHVNITNQTKKRLMRTKQITLLKVKNQHTEKPNKNESVEES 249
LC F + G C+ GT+C++ H + K T K ++ N + V +
Sbjct: 146 LCDKFSMTGNCKYGTRCQFIHKIVDGNAAKLASGAHANTSSKSPARNAAAHNHSLFVPQG 205
Query: 248 QNERNMD 228
+R+MD
Sbjct: 206 STDRSMD 212
>Z77661-1|CAB01186.1| 341|Caenorhabditis elegans Hypothetical
protein F40G12.1 protein.
Length = 341
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 592 WPFVANF*KVFVMRILVYYLTI*QVRRCLHAIFI 491
W VANF + + I +Y L I + RCL + F+
Sbjct: 101 WILVANFARTVCLFIAMYILPIFMIERCLASFFV 134
>Z82267-5|CAB05193.1| 203|Caenorhabditis elegans Hypothetical
protein F38C2.7 protein.
Length = 203
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/45 (24%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -2
Query: 440 NKNSKLCSDF-LKGYCERGTKCEYRHVNITNQTKKRLMRTKQITL 309
N + LC++F G+C+ G +C++ H ++ + + + + + IT+
Sbjct: 129 NYKTVLCNNFSTTGHCKYGIRCQFIHRSMNSTSSNQSNKMENITI 173
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 446 KLNKNSKLCSDFL-KGYCERGTKCEYRH 366
K + + C DF +GYC RG +C Y H
Sbjct: 204 KSRSSRRRCKDFEERGYCIRGDQCPYYH 231
>AL110495-2|CAB60410.1| 203|Caenorhabditis elegans Hypothetical
protein Y60A9.3 protein.
Length = 203
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -2
Query: 440 NKNSKLCSDF-LKGYCERGTKCEYRHVNITNQTKKRLMRTKQITL 309
N + LC+ F G+C+ G +C++ H ++ + + + T+ +T+
Sbjct: 129 NYKTVLCNKFSTTGHCKYGIRCQFIHRSMDSTSSNQSNETENVTI 173
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/55 (27%), Positives = 20/55 (36%)
Frame = -2
Query: 623 NCKFLHDKKHVAICRKFLKGICHEDTCLLSHDITSEKMPTCYFYLKGMCTKENCP 459
NC D + +C G+ + C L +I T GMC NCP
Sbjct: 767 NCSMECDNSYDPLCGT--NGVTFTNACSLQKEICESANSTIEVAYTGMCCDTNCP 819
>AF016418-9|AAK18904.1| 186|Caenorhabditis elegans Hypothetical
protein C49G7.11 protein.
Length = 186
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -2
Query: 563 ICHEDTCLLSHDITSEKMPTCYFYLKGMCTKENCPYL 453
IC T LL+H I +E++ TC++ +K T+ YL
Sbjct: 104 ICAGPTVLLAHGIVAERV-TCHYTVKDKMTEGGYKYL 139
>U29157-1|AAA68423.4| 675|Caenorhabditis elegans Hypothetical
protein C34D10.2 protein.
Length = 675
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 8/43 (18%)
Frame = -2
Query: 470 ENCPYLHVKLNKN-------SKLCSDFLK-GYCERGTKCEYRH 366
+NC Y H + + S C+D L+ GYC R C + H
Sbjct: 260 DNCQYCHTRTEQQFHPEIYKSTKCNDMLEHGYCPRAVFCAFAH 302
>Z82267-3|CAB05191.1| 186|Caenorhabditis elegans Hypothetical
protein F38C2.5 protein.
Length = 186
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/21 (47%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = -2
Query: 425 LCSDFLK-GYCERGTKCEYRH 366
LC +F + G+C+ GTKC++ H
Sbjct: 120 LCDNFSRTGHCKYGTKCQFIH 140
>AL032655-2|CAB60457.1| 561|Caenorhabditis elegans Hypothetical
protein Y6B3B.4 protein.
Length = 561
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 341 KRLMRTKQITLLKVKNQHTEKPNKNESVEESQNERN 234
+R+M K I L+ N+ E K+ SVEE Q E+N
Sbjct: 290 QRVMEVKFIATLQEDNKRYELLAKDASVEEKQLEKN 325
>AF000265-7|AAB52941.1| 893|Caenorhabditis elegans Hypothetical
protein C18E3.3 protein.
Length = 893
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 512 SSHLLYREIIDKYPHDKYLLKI-CDKWPHVFY 604
+SH+LY++I+ ++LK+ D PH FY
Sbjct: 838 NSHILYKKIMSDLVRTMFILKLDSDGKPHFFY 869
>AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical
protein C15F1.5a protein.
Length = 381
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = -2
Query: 635 PIKGNCKFLHDKKHVAICRKFLKGICHEDTCLLSHDITSEKMPTC 501
P+ C+ + ++ + + L+ CH D C +D+ S K +C
Sbjct: 56 PMTSTCEGENCQRKIMGNAEILRTACHHDICQHCYDLASRKEKSC 100
>AL117204-38|CAL49444.1| 982|Caenorhabditis elegans Hypothetical
protein Y116A8C.16c protein.
Length = 982
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = -2
Query: 587 ICRKFLKGICHEDTCLLSHDITSEKMPTCYFYLKGMC---TKENCPYLHVKLNKNSKLCS 417
ICRK HE L H C L+G+C TK+ C ++ ++N+ LCS
Sbjct: 630 ICRKK-----HEGAGLPEHVTCQVTGRPCCIQLQGLCRIATKQYCDFVRGHWHENATLCS 684
>AL117204-31|CAB55122.2| 727|Caenorhabditis elegans Hypothetical
protein Y116A8C.16a protein.
Length = 727
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = -2
Query: 587 ICRKFLKGICHEDTCLLSHDITSEKMPTCYFYLKGMC---TKENCPYLHVKLNKNSKLCS 417
ICRK HE L H C L+G+C TK+ C ++ ++N+ LCS
Sbjct: 375 ICRKK-----HEGAGLPEHVTCQVTGRPCCIQLQGLCRIATKQYCDFVRGHWHENATLCS 429
>AL117204-11|CAB55126.1| 201|Caenorhabditis elegans Hypothetical
protein Y116A8C.20 protein.
Length = 201
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -2
Query: 440 NKNSKLCSDFLK-GYCERGTKCEYRH--VNITNQTK 342
N + LC F GYC+ G +C++ H ++ TN T+
Sbjct: 129 NYKTVLCDKFTTTGYCKYGIRCQFIHRSMDATNVTR 164
>AL117204-8|CAB55123.1| 205|Caenorhabditis elegans Hypothetical
protein Y116A8C.17 protein.
Length = 205
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 440 NKNSKLCSDFLK-GYCERGTKCEYRHVNITNQTKKRLMRT 324
N + LC F GYC+ G +C++ H ++ + M T
Sbjct: 133 NYKTVLCDKFTTTGYCKYGARCQFIHRSMDTTPAAKPMET 172
>AF045646-5|AAK29828.1| 225|Caenorhabditis elegans Hypothetical
protein F56B3.3 protein.
Length = 225
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 212 PDSICNPYFFHFDF--LQHFHSYLVFPYVDFLLLTMLFVLSSS 334
P S PYFF + F QH H L +DFL + F+ +S
Sbjct: 62 PGSARKPYFFLYIFHHHQHLHQLLHLELLDFLQKSDFFLFVNS 104
>AC024761-9|AAP13757.1| 279|Caenorhabditis elegans Hypothetical
protein Y38C1AA.12 protein.
Length = 279
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 338 RLMRTKQITLL-KVKNQHTEKPNKNESVEESQNERNMDCRYYRDIKPNFE 192
R + QI+ L KVK H + N + V E ++ R + R +K NFE
Sbjct: 197 RWLDAPQISALGKVKEAHEDVSNIHLQVYEIESARRKKRKQARSVKENFE 246
>Z99281-15|CAB16528.1| 199|Caenorhabditis elegans Hypothetical
protein Y57G11C.25 protein.
Length = 199
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -2
Query: 425 LCSDF-LKGYCERGTKCEYRH 366
LC +F G+C+ GTKC++ H
Sbjct: 116 LCDNFSTTGHCKYGTKCQFIH 136
>U40797-8|AAL08029.1| 332|Caenorhabditis elegans Serpentine
receptor, class u protein7 protein.
Length = 332
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 298 FTFNNV-ICFVLINRFFV*LVIFTCLYSHFVPLSQYPLRKS 417
FTFN + F L+ F+V I+ Y+ FV + QY +K+
Sbjct: 17 FTFNTFPVYFALLPLFYVIPTIYIVNYTIFVFMEQYTRKKT 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,874,346
Number of Sequences: 27780
Number of extensions: 290390
Number of successful extensions: 1004
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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