Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13m02
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    26   0.37 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.0  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   7.9  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
 Frame = -2

Query: 392 RGTKC-EYRHVNITNQTKKRLMRTKQ-ITLLKVKNQHTEKPNKNESVEESQNERNMDCRY 219
           R T+C  Y + N  NQ         Q        NQ+  K N N   +  QN+   +   
Sbjct: 415 RNTRCGRYHNQNAGNQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNR 474

Query: 218 YRDIKPN 198
             D K N
Sbjct: 475 QNDNKQN 481


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 548 YPHDKYLLKICDKWPHVFYHAKIYNFLLLVV 640
           YP  K ++  C+     F  +++YN LL+++
Sbjct: 657 YPDRKQVILKCNIQDMSFLFSQLYNALLILI 687


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 548 YPHDKYLLKICDKWPHVFYHAKIYNFLLLVV 640
           YP  K ++  C+     F  +++YN LL+++
Sbjct: 747 YPDRKQVILKCNIQDMSFLFSQLYNALLILI 777


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 304 FNNVICFVLINRFF 345
           FNNVI ++  +RFF
Sbjct: 3   FNNVIKYINFDRFF 16


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 5/23 (21%), Positives = 15/23 (65%)
 Frame = -2

Query: 302 VKNQHTEKPNKNESVEESQNERN 234
           ++N H    N+N++++ + N+ +
Sbjct: 409 IRNTHCVNNNQNDNIQNTNNQND 431


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = -2

Query: 347 TKKRLMRTKQITLLKVKNQHTEKPNKNESVEESQNER 237
           ++KR  R+++      KN+++ +  +  S E S++ R
Sbjct: 268 SRKRYSRSREREQKSYKNENSYRKYRETSKERSRDRR 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,135
Number of Sequences: 438
Number of extensions: 3788
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)