Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13l11
         (248 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          20   4.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      20   4.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    20   5.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   5.3  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           19   7.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   7.1  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           19   7.1  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 7   FSFYVLYNFKYIRIVN 54
           FS    Y +KY+ ++N
Sbjct: 315 FSSLPYYKYKYLNVIN 330


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 7   FSFYVLYNFKYIRIVN 54
           FS    Y +KY+ ++N
Sbjct: 315 FSSLPYYKYKYLNVIN 330


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 19  VLYNFKYIRIVNKNLLLVCCR 81
           +LYN   I+  N     +CC+
Sbjct: 326 ILYNLMSIKYRNAFKQTICCK 346


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 19.8 bits (39), Expect = 5.3
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 102 SLNGYDAGDG 131
           SLNGY + DG
Sbjct: 160 SLNGYGSSDG 169


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +1

Query: 67  LVCCRRGFRS 96
           L+CC RG+++
Sbjct: 115 LMCCGRGYKT 124


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 72  YQQQVFIHNSD 40
           Y + +FIH+SD
Sbjct: 167 YMKVIFIHSSD 177


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 19.4 bits (38), Expect = 7.1
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +1

Query: 67  LVCCRRGFRS 96
           L+CC RG+++
Sbjct: 116 LMCCGRGYKT 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,430
Number of Sequences: 438
Number of extensions: 572
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)