Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13l04
(479 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 122 4e-29
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 46 3e-06
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 46 3e-06
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 42 4e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 40 2e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 40 3e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 38 0.001
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 38 0.001
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 37 0.001
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 37 0.001
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 37 0.001
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 37 0.001
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 36 0.003
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 34 0.010
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 33 0.017
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.017
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 32 0.039
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 32 0.039
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 32 0.052
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 31 0.12
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 31 0.12
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 30 0.16
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.16
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 28 0.64
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 28 0.84
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 1.5
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 26 2.6
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 3.4
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 3.4
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 26 3.4
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 4.5
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 5.9
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 25 5.9
SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1... 25 5.9
SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase comp... 25 5.9
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 7.8
SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase Bgl2|Schizosacch... 25 7.8
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 25 7.8
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 25 7.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 7.8
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 122 bits (293), Expect = 4e-29
Identities = 53/82 (64%), Positives = 69/82 (84%)
Frame = -2
Query: 331 EVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACD 152
EVN IL+I+NL +KI+AEEMYD+FG+YG +RQIR+GNT +TRGTAFVVYE++ DA+ AC+
Sbjct: 9 EVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACE 68
Query: 151 HLSGFNVCNRYLVVLYYRSNKA 86
LSG+N +RYLVV YY +A
Sbjct: 69 KLSGYNFMDRYLVVHYYNPERA 90
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 46.0 bits (104), Expect = 3e-06
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Frame = -2
Query: 385 HTKMALALQRRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGN--TPE 212
H + A + R P+ +IL I+NLP++ + +++ + G YG +R +RV
Sbjct: 701 HQGVDAAAEVRKQDSSKPKGTKIL-IKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRS 759
Query: 211 TRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYRSN 92
RG AF + +A NA L ++ R+L VL Y SN
Sbjct: 760 ARGFAFAEFVTAREAANAMRALKNTHLLGRHL-VLQYASN 798
Score = 41.5 bits (93), Expect = 6e-05
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = -2
Query: 361 QRRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFV 191
++ N++L E R L++RNL Y + +++ +FG +G + Q+ + T +G A++
Sbjct: 311 EQERNIQLISETKR-LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYI 369
Query: 190 VYEDIFDAKNACDHLSGFNVCNRYLVVL 107
+ D DA A L R L VL
Sbjct: 370 DFHDADDAVRAYLELDAKPFQGRLLHVL 397
Score = 31.9 bits (69), Expect = 0.052
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = -2
Query: 325 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 146
+ +L ++N PY SAEE+ +F +G + +I + P A + + + D + A L
Sbjct: 505 DNVLLVKNFPYGTSAEELTSLFSPFGELGRILI---PPAGTIAIIEFLNAPDCRQAFSKL 561
Query: 145 S 143
+
Sbjct: 562 A 562
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 46.0 bits (104), Expect = 3e-06
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Frame = -2
Query: 316 LYIRNLPYKISAEEMYDI----FGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDH 149
LYIRN+ KI + I FG YG + ++ T RG AFVV++++ +A A
Sbjct: 28 LYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASRALKD 87
Query: 148 LSGFNVCNRYLVVLYYRS 95
L G+ + + +++ Y +S
Sbjct: 88 LQGYPLYGKPMMIQYSKS 105
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 42.3 bits (95), Expect = 4e-05
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Frame = -2
Query: 319 ILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPET---RGTAFVVYEDIFDAKNACDH 149
++Y+ N+PY+++ E++ DIF + G ++ ++ PE+ +G F Y D A +A +
Sbjct: 6 VVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65
Query: 148 LSGFNVCNRYLVV 110
L+ ++ R L V
Sbjct: 66 LNNYDAGTRRLRV 78
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.9 bits (89), Expect = 2e-04
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = -2
Query: 316 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAF--VVYEDIFDAKNACDHLS 143
+Y+ NLP+ S + D+F G++ + R+ P R F V +E+ DA ++ + L+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 142 GFNVCNRYLVVLY 104
G+ R L + Y
Sbjct: 342 GYRYGGRPLQLSY 354
Score = 29.5 bits (63), Expect = 0.28
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -2
Query: 301 LPYKISAEEMYDIFGKYGAI--RQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGFNVC 128
LPY + +++ D+F + G++ I++ +RG VV + +A +A L +
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFM 249
Query: 127 NRYLVV 110
R L V
Sbjct: 250 GRTLEV 255
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 39.5 bits (88), Expect = 3e-04
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Frame = -2
Query: 325 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPET---RGTAFVVYEDIFDAKNAC 155
N L++RNL ++ +++ + F G I+ V PET RG FV + + DA+ A
Sbjct: 4 NSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAA 63
Query: 154 DHLSGFNVCNRYL 116
L + R L
Sbjct: 64 KELKNKKLHGRIL 76
Score = 29.1 bits (62), Expect = 0.36
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = -2
Query: 316 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPET---RGTAFVVYEDIFDAKNACDHL 146
+++RNL ++ + +E+Y+ F ++G + ++ P T G F+ + D +N +
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLEMA 338
Query: 145 S 143
S
Sbjct: 339 S 339
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 37.5 bits (83), Expect = 0.001
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = -2
Query: 373 ALALQRRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETR--GT 200
A L R A+ +P +R L + N+ + ++ E++ IF +G I + + + R G
Sbjct: 326 AAELARAASAEIP--FHR-LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGF 382
Query: 199 AFVVYEDIFDAKNACDHLSGFNVCNRYLVV 110
++ Y + A+NA + ++GF++ R + V
Sbjct: 383 GYIQYRNPISARNALEKMNGFDLAGRNMRV 412
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -2
Query: 322 RILYIRNLPYKISAEEMYDIFGKYGAIRQ---IRVGNTPETRGTAFVVY 185
R +++ L ++++ E+YD F + G +R +R + ++G A+V +
Sbjct: 240 RTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEF 288
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 37.5 bits (83), Expect = 0.001
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = -2
Query: 316 LYIRNLPYKISAEEMYDIFGKYGAIRQIRV--GNTPETRGTAFVVYEDIFDAKNACDHLS 143
+YI+NL +I+ +E D+FG++G I + + + RG FV Y + A+ A D L+
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Score = 31.9 bits (69), Expect = 0.052
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -2
Query: 316 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETR---GTAFVVYEDIFDAKNACDHL 146
LY+ L ++ ++++F G + IRV TR G A+V + ++ D + A D L
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 145 S 143
+
Sbjct: 142 N 142
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 37.1 bits (82), Expect = 0.001
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Frame = -2
Query: 316 LYIRNLPYKISAEEMYDIFGKYGA---IRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 146
+YI NL + ++ +++ +F ++G I +R T +++G AF+ YED A D++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 145 SGFNVCNRYLVVLYYRSNK 89
+ + +R + V + S K
Sbjct: 93 TNVKLLDRLVRVDHVASYK 111
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 37.1 bits (82), Expect = 0.001
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = -2
Query: 322 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNT-PETRGTAFVVYEDIFDAKNACDHL 146
R LY+ N+ +K++ +++ F YG + +R+ + +G +VV DA+NA
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALS-A 815
Query: 145 SGFNVCNRYLVVLYYRSNKAFK 80
+G + NR L V+ + ++ +
Sbjct: 816 AGKQLGNRVLNVVLSKPRESLE 837
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 37.1 bits (82), Expect = 0.001
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = -2
Query: 316 LYIRNLPYKISAEEM----YDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDH 149
LY+ NL KI+ ++ Y +F YG + I TP+ RG A VV+ D A A
Sbjct: 6 LYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMKA 65
Query: 148 LSGFNVCNRYLVVLYYRS 95
L F + + + Y S
Sbjct: 66 LKNFIFFGKEMKIQYAHS 83
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 37.1 bits (82), Expect = 0.001
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = -2
Query: 316 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPET---RGTAFVVYEDIFDAKNACDHL 146
L + NL EE+ D+F ++G I+++ + ET +G AFV Y D A A D L
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRL 263
Query: 145 SGFNVCNRYL 116
G+ N L
Sbjct: 264 DGYGWNNLIL 273
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 35.9 bits (79), Expect = 0.003
Identities = 13/52 (25%), Positives = 31/52 (59%)
Frame = -2
Query: 319 ILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAK 164
++++ N+PY +S ++M +IF + G ++ ++ PET + + FD++
Sbjct: 8 VVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSE 59
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 34.3 bits (75), Expect = 0.010
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -2
Query: 322 RILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGN---TPETRGTAFVVYEDIFDAKNACD 152
+ +++ L Y ++ F +YG I +IRV T ++ G AFVV+E D K A
Sbjct: 100 KTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYK 159
Query: 151 HLSGFNVCNRYLVVLYYRSNKAFKGY 74
+G + R +VV R + KG+
Sbjct: 160 ASAGLMLNGRRIVVDVER-GRTVKGW 184
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 33.5 bits (73), Expect = 0.017
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -2
Query: 334 PEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETR 206
P +N+ +YI+ LP ++ +E+ ++F K G I + TP +
Sbjct: 106 PVINKAVYIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPRIK 148
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 33.5 bits (73), Expect = 0.017
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = -2
Query: 331 EVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACD 152
E L++ NLP +SA + F YG + IR+ + +AF+ ++ + AK+ +
Sbjct: 584 EPTHALWVGNLPSGVSATTVATTFSAYGTVSSIRM---LSHKHSAFLNFDSVETAKHVLE 640
Query: 151 HLSG 140
L+G
Sbjct: 641 ELNG 644
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 32.3 bits (70), Expect = 0.039
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = -2
Query: 316 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGF 137
L++ +P + + E+M D F YG I ++ N G FV ED DA++ + G
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLMN-----GFGFVEVEDARDARDIVNDFQGK 60
Query: 136 NVCNRYLVV 110
+VV
Sbjct: 61 EFMGSRIVV 69
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.3 bits (70), Expect = 0.039
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = -2
Query: 325 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDA 167
+R ++I NLP +E+ + FGK+G I I++ + AFV + +I DA
Sbjct: 298 SRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKI---LSKKNIAFVHFLNIRDA 347
Score = 28.3 bits (60), Expect = 0.64
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = -2
Query: 325 NRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 146
+R +Y ++ ++ EE+ I +YG I I+ + R + FV Y +I +A A + L
Sbjct: 499 SRNVYFSHISDSLTTEELELILRQYGEIESIKY---LKNRSSGFVAYTNISNAMKAVNGL 555
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 31.9 bits (69), Expect = 0.052
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = -2
Query: 343 RLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRV---GNTPETRGTAFVVYEDIF 173
R P E R + + NL ++ E + +IFG YG I I + + +G ++ Y
Sbjct: 92 RSPEEPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHD 151
Query: 172 DAKNACDHLSGFNVCNRYLVV 110
A NA D ++ + L V
Sbjct: 152 QAANAVDKMNNAELDGEELFV 172
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 30.7 bits (66), Expect = 0.12
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Frame = -2
Query: 376 MALALQRRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGT- 200
+AL N R + +Y+ NLP + +++++F +G + + + + + T
Sbjct: 2 IALEKLSEKNKRSTKKCEISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTD 61
Query: 199 -------AFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYRSNKAFK 80
AF+ +E+ A NA L+G + L V Y + +K
Sbjct: 62 SKSPTLFAFITFENKCSADNAIASLNGSSFQGNTLKVEYTHIVERYK 108
Score = 27.9 bits (59), Expect = 0.84
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 319 ILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNT 218
++ I NLP K+S E+Y+ F +G I + + +
Sbjct: 271 VIGILNLPLKVSPVELYNEFSNHGHILGVAINQS 304
Score = 27.9 bits (59), Expect = 0.84
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Frame = -2
Query: 316 LYIRNLPYKI-----SAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACD 152
L+++NL I EE++ FG+ + +T ++G FV + F+A A +
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 151 HLSGFNVCNRYLVVLY 104
L+G + L V Y
Sbjct: 481 TLNGVLFGKKRLFVNY 496
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 30.7 bits (66), Expect = 0.12
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = -2
Query: 319 ILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 146
+LY+ NLP S+ ++ +F YG ++ I + +P+ +A V YE + A A D L
Sbjct: 1 MLYVSNLPVGTSSSAIHALFSAYGNVKDIWM-LSPD--NSAIVSYESLSSAIVARDAL 55
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 30.3 bits (65), Expect = 0.16
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
Frame = -2
Query: 382 TKMALALQRRANVRLPPE-----VNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVG-- 224
T ++ + + PPE + + I+N+P+ + E ++ +F R
Sbjct: 207 TALSRGMSNSVTLTAPPEPDEETIPTAIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYH 266
Query: 223 -NTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYR 98
+ RG AF + +AK L+G+ + R L V + R
Sbjct: 267 FDNGVFRGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKR 309
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 30.3 bits (65), Expect = 0.16
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = -2
Query: 316 LYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPET--RGTAFVVYEDIFDAKNACDHLS 143
+++ NL ++ +Y+ F +G I + + + R AFV +++ DAK A ++++
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 142 GFNVCNRYLVV 110
+C+R + V
Sbjct: 68 YSILCDRCIRV 78
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 28.3 bits (60), Expect = 0.64
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -2
Query: 322 RILYIRNLPYKISAEEMYDIFGKYGAIRQ--IRVGNTPETRGTAFVVYEDIFDAKNACDH 149
R LY+ + A E+ F +G + + I + T +R AFV YED DA++A
Sbjct: 7 RTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDAEDAYYE 66
Query: 148 LSG 140
+ G
Sbjct: 67 VHG 69
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 27.9 bits (59), Expect = 0.84
Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = -2
Query: 319 ILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGT---AFVVYEDI 176
+LY+ LP+ ++M F ++G + ++R+ +T + AF+ +E +
Sbjct: 106 VLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESL 156
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.1 bits (57), Expect = 1.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 316 LYIRNLPYKISAEEMYDIFGKYGAIRQI 233
+Y+ N+ ++S EE+ F KYG + I
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESI 46
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 26.2 bits (55), Expect = 2.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 196 FVVYEDIFDAKNACDHLSGFNVCNRYLVVL 107
FV+YE AK D + G RY+V+L
Sbjct: 427 FVLYEKTLGAKKDLDEIVGMVFYGRYIVLL 456
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 3.4
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = -2
Query: 316 LYIRNLPYKISAEEMYDIFGKYGAIRQIR-VGNTPE--TRGTAFVVYEDIFDAKNACDHL 146
+YI NLP + +++ ++ +G + + + N + ++G F +++ DA+ A L
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISGL 371
Query: 145 SG 140
G
Sbjct: 372 DG 373
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 25.8 bits (54), Expect = 3.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 201 VPLVSGVFPTLICLIAPYLPKISYISSADIL*GKFLMY 314
VP++S + L+ A YLP+ Y S + L G FL++
Sbjct: 382 VPMISKLRRVLMTF-ATYLPENGYCQSLNFLAGFFLLF 418
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 25.8 bits (54), Expect = 3.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 74 IPFKGFVGSIVEYNQIPVTNI 136
+PF G++G++ Y Q PV +
Sbjct: 387 LPFSGWIGTVNPYTQTPVNAV 407
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 4.5
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = -2
Query: 334 PEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNAC 155
P N I Y+ NLP S EE+ +F +++ T FV +E+I A A
Sbjct: 423 PPCNTI-YVGNLPPSTSEEELKVLFSTQVGYKRL-CFRTKGNGPMCFVEFENIPYAMEAL 480
Query: 154 DHLSG 140
+L G
Sbjct: 481 KNLQG 485
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 5.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 225 GTLQKQEAQHLL-FMKIYLMQKMPVTIYLVLMFVTGIW 115
GTLQ A H+ KI K+P + L+F +GIW
Sbjct: 559 GTLQ--HAMHMTQSAKIGHYMKVPPRLVAALLFTSGIW 594
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 25.0 bits (52), Expect = 5.9
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -2
Query: 280 EEMYDIFGKYGAIRQIRVGNT--PETRGTAFVVYEDIFDAKNACDHLS 143
E+M+ F KYG + Q+ V + G +V ++ A+NA D L+
Sbjct: 78 EDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLN 125
>SPAC3G6.05 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 206
Score = 25.0 bits (52), Expect = 5.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 33 FQCINFFLVSYQYQYP 80
FQ +NF+L+ QYQ P
Sbjct: 159 FQTVNFWLMPLQYQMP 174
>SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase complex
II subunit Rpb7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 172
Score = 25.0 bits (52), Expect = 5.9
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 399 KNNSSTPKWH*HFKEEQMYDYLQKSTESYTSGTCPTKYPLKKCMISS 259
K S T H + +M DYL+ + GTC +Y C++ S
Sbjct: 6 KELSLTISLHPSYFGPRMQDYLKAKLLADVEGTCSGQYGYIICVLDS 52
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = -3
Query: 402 CKNNSSTPKWH*HFKEEQMYDYLQKSTESYTSGTCPTKYPLKKCMISSANMAQ 244
C N S H + +EQ+Y+ ++ ++ + T T+ + +C + N+++
Sbjct: 1335 CCNKSCRGSVHFEYNDEQLYNQIKFLLKAVQTTTGATRNGIIRCNAINKNISR 1387
>SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase
Bgl2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 321
Score = 24.6 bits (51), Expect = 7.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 325 NRILYIRNLPYKISAEEMYDIFG 257
+ +LY +LP + AE +YD+ G
Sbjct: 140 SEVLYRNDLPADVLAERIYDVRG 162
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 24.6 bits (51), Expect = 7.8
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -3
Query: 141 VLMFVTGIWLYSTIDPTKP 85
V +T +WL S +DP P
Sbjct: 257 VCSIITALWLKSVVDPNTP 275
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 24.6 bits (51), Expect = 7.8
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Frame = +2
Query: 212 FW-SVPYSYLSYCAIFAED 265
+W S+P Y YC IF +D
Sbjct: 4 YWKSIPKYYCKYCQIFVKD 22
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 68 LIRNQEEIDTLKKKYGISSEDL 3
LI+ QE++D+L+K EDL
Sbjct: 677 LIKKQEDVDSLEKNIQTLKEDL 698
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,124,695
Number of Sequences: 5004
Number of extensions: 44579
Number of successful extensions: 182
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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