Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13l01
         (453 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   0.89 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   1.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   1.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   3.6  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   4.7  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   4.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   6.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 0.89
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 250 DASSRSAFTFMPPVTRAIVSRPDKSVT 330
           +A  R  FT+   + ++I+  PDK +T
Sbjct: 500 NADVRPPFTYASLIRQSIIESPDKQLT 526


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect(2) = 1.7
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = -1

Query: 168 PCYWWK 151
           PC WWK
Sbjct: 540 PCCWWK 545



 Score = 20.2 bits (40), Expect(2) = 1.7
 Identities = 5/7 (71%), Positives = 5/7 (71%)
 Frame = -1

Query: 303 YRPCHWW 283
           Y PC WW
Sbjct: 538 YYPCCWW 544


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect(2) = 1.7
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = -1

Query: 168 PCYWWK 151
           PC WWK
Sbjct: 487 PCCWWK 492



 Score = 20.2 bits (40), Expect(2) = 1.7
 Identities = 5/7 (71%), Positives = 5/7 (71%)
 Frame = -1

Query: 303 YRPCHWW 283
           Y PC WW
Sbjct: 485 YYPCCWW 491


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 105 SCSFKYEDWPH 73
           SC+ K+E +PH
Sbjct: 131 SCAMKFESYPH 141


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 383 TVFGVAHIFASFNDTFVHVTDLSGRETI 300
           ++F +  IF   N+T   VTD    ET+
Sbjct: 12  SIFLILIIFIYSNETIAQVTDDENCETL 39


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 383 TVFGVAHIFASFNDTFVHVTDLSGRETI 300
           ++F +  IF   N+T   VTD    ET+
Sbjct: 12  SIFLILIIFIYSNETIAQVTDDENCETL 39


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 249 TLRCYVGGTGCSREMQ 202
           T+RC+ GG   S E Q
Sbjct: 296 TVRCFTGGPRKSHESQ 311


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 81  NLHT*TSKSPKCRLSTR 131
           N+HT  SK P C +  R
Sbjct: 24  NVHTRPSKEPICNICKR 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,028
Number of Sequences: 438
Number of extensions: 2543
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)