Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13k20
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    24   1.5  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   4.7  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    21   8.2  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 238 NTLYFNTIYSNSXNHQAYYSTGNV 167
           ++L  NTI++N+ N + YY+  N+
Sbjct: 316 SSLSNNTIHNNNYNKKLYYNIINI 339


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 458 NVLNSLCNFFEMKFHIIKCRFGINQNLYGINNNPKIVLIQFIGKF 592
           NV   +C+ + ++F  +  ++GI QN        +I ++   G F
Sbjct: 48  NVPTFMCHKYGLRFEEVSEKYGILQNWMDKFRGEEIAILYDPGMF 92


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 256 SYNSTRNTLYFNTIYSNSXNHQAYYSTGNVSST 158
           +Y+S  NTL +  + SN   +  + +  N SST
Sbjct: 300 AYSSLENTLKYYEVGSNVPFNFKFITDANSSST 332


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 101 PLLLNNAINRCPAIMLAVNRT 163
           P +LNN  NRC +  + +  T
Sbjct: 58  PEVLNNHCNRCTSRQIGIANT 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,988
Number of Sequences: 438
Number of extensions: 2495
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)