Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13k16
         (777 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC074943-1|AAH74943.1|  332|Homo sapiens opticin protein.              31   6.1  
BC074942-1|AAH74942.1|  332|Homo sapiens opticin protein.              31   6.1  
AY077681-1|AAL78286.1|  332|Homo sapiens opticin protein.              31   6.1  
AL391817-3|CAI17035.1|  332|Homo sapiens opticin protein.              31   6.1  
AJ133790-1|CAB53459.1|  332|Homo sapiens opticin protein.              31   6.1  
AF161702-1|AAD45900.1|  332|Homo sapiens oculoglycan protein.          31   6.1  

>BC074943-1|AAH74943.1|  332|Homo sapiens opticin protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 118 LLLNSAPNYGVPDCDICEMLRRSI 189
           LLL+S PN+G+P C +C  L  S+
Sbjct: 115 LLLSSQPNHGLPTCLVCVCLGSSV 138


>BC074942-1|AAH74942.1|  332|Homo sapiens opticin protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 118 LLLNSAPNYGVPDCDICEMLRRSI 189
           LLL+S PN+G+P C +C  L  S+
Sbjct: 115 LLLSSQPNHGLPTCLVCVCLGSSV 138


>AY077681-1|AAL78286.1|  332|Homo sapiens opticin protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 118 LLLNSAPNYGVPDCDICEMLRRSI 189
           LLL+S PN+G+P C +C  L  S+
Sbjct: 115 LLLSSQPNHGLPTCLVCVCLGSSV 138


>AL391817-3|CAI17035.1|  332|Homo sapiens opticin protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 118 LLLNSAPNYGVPDCDICEMLRRSI 189
           LLL+S PN+G+P C +C  L  S+
Sbjct: 115 LLLSSQPNHGLPTCLVCVCLGSSV 138


>AJ133790-1|CAB53459.1|  332|Homo sapiens opticin protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 118 LLLNSAPNYGVPDCDICEMLRRSI 189
           LLL+S PN+G+P C +C  L  S+
Sbjct: 115 LLLSSQPNHGLPTCLVCVCLGSSV 138


>AF161702-1|AAD45900.1|  332|Homo sapiens oculoglycan protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 118 LLLNSAPNYGVPDCDICEMLRRSI 189
           LLL+S PN+G+P C +C  L  S+
Sbjct: 115 LLLSSQPNHGLPTCLVCVCLGSSV 138


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,762,717
Number of Sequences: 237096
Number of extensions: 2469922
Number of successful extensions: 4360
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4358
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)