Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13k16
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    35   0.001
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      35   0.001
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.79 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.79 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.5  

>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 34.7 bits (76), Expect = 0.001
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 551 PSNMITVPPNCPPGQVYINGQCRDI 477
           P  +I VPP CPPG  +I  +CR I
Sbjct: 51  PRYIIDVPPRCPPGSKFIKNRCRVI 75



 Score = 29.9 bits (64), Expect = 0.028
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 644 PSNMITVPPNCPPGQVYINGQWR 576
           P  +I VPP CPPG  +I  + R
Sbjct: 51  PRYIIDVPPRCPPGSKFIKNRCR 73


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 34.7 bits (76), Expect = 0.001
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 551 PSNMITVPPNCPPGQVYINGQCRDI 477
           P  +I VPP CPPG  +I  +CR I
Sbjct: 51  PRYIIDVPPRCPPGSKFIKNRCRVI 75



 Score = 29.9 bits (64), Expect = 0.028
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 644 PSNMITVPPNCPPGQVYINGQWR 576
           P  +I VPP CPPG  +I  + R
Sbjct: 51  PRYIIDVPPRCPPGSKFIKNRCR 73


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 463 FLDYLKKGSLPRSQIFLEM 407
           F+  LK G LPR Q+F  M
Sbjct: 80  FMQLLKHGMLPRGQVFTMM 98


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 463 FLDYLKKGSLPRSQIFLEM 407
           F+  LK G LPR Q+F  M
Sbjct: 80  FMQLLKHGMLPRGQVFTMM 98


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 183 KYIILNFRSFKLSVETTLIDRGWSVRG 263
           KY++  F    +S+  T+I   W+ RG
Sbjct: 298 KYLLFTFIMNTVSILVTVIIINWNFRG 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,918
Number of Sequences: 438
Number of extensions: 5341
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)