Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13k08
(696 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 31 0.010
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 27 0.13
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 27 0.23
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 24 1.2
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 24 1.2
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 23 2.1
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 23 2.1
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 23 2.1
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 23 2.1
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 23 2.1
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 23 2.1
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 23 2.1
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 23 2.1
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 23 2.1
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 23 2.1
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 23 2.1
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 22 6.4
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 22 6.4
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 21 8.5
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 31.1 bits (67), Expect = 0.010
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 448 SYTNQNDDSYFLDKKPRYTKYLGIRVLNKGTDDF 549
SYTN+ D+SYF + Y K G + N DD+
Sbjct: 10 SYTNKKDESYFDEGGRSYGKGRGFIIQNNNNDDW 43
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 27.5 bits (58), Expect = 0.13
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 579 NNRNMTKWRLSSQNGGEQHDGRR-EHRLAGNRR 674
NN+N + QNG Q+D R+ +++ GNR+
Sbjct: 443 NNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQ 475
Score = 23.0 bits (47), Expect = 2.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 579 NNRNMTKWRLSSQNGGEQHDGRREHRLAGNRR 674
N +N K + QNG Q+D +R GNR+
Sbjct: 493 NRQNGNKQNDNKQNGNRQNDNKRN----GNRQ 520
Score = 22.2 bits (45), Expect = 4.8
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 579 NNRNMTKWRLSSQNGGEQHDGRRE-HRLAGNRR 674
N +N K + QNG +Q+D ++ +R N+R
Sbjct: 483 NRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKR 515
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 26.6 bits (56), Expect = 0.23
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 403 QTVHSRFICLYNYLNSYTNQNDDSYFLDKKPRYTKYL 513
+T+H+ YNY N Y N N+++Y +KK Y Y+
Sbjct: 88 KTIHNNNNYKYNYNNKY-NYNNNNY--NKKLYYKNYI 121
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 24.2 bits (50), Expect = 1.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 433 YNYLNSYTNQNDDSYFLDKKPRYTKYLGI 519
YNY N+Y N N++ KK +Y + I
Sbjct: 92 YNYNNNYNNYNNNYNTNYKKLQYYNIINI 120
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 24.2 bits (50), Expect = 1.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 433 YNYLNSYTNQNDDSYFLDKKPRYTKYL 513
YN N+Y N N ++Y +KK Y Y+
Sbjct: 327 YNNYNNYNNNNYNNY--NKKLYYKNYI 351
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 433 YNYLNSYTNQNDDSY 477
YNY N+Y N N +Y
Sbjct: 92 YNYNNNYNNYNKHNY 106
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 433 YNYLNSYTNQNDDSY 477
YNY N+Y N N +Y
Sbjct: 92 YNYNNNYNNYNKHNY 106
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 433 YNYLNSYTNQNDDSY 477
YNY N+Y N N +Y
Sbjct: 92 YNYNNNYNNYNKHNY 106
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 433 YNYLNSYTNQNDDSY 477
YNY N+Y N N +Y
Sbjct: 92 YNYNNNYNNYNKHNY 106
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 433 YNYLNSYTNQNDDSY 477
YNY N+Y N N +Y
Sbjct: 92 YNYNNNYNNYNKHNY 106
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 433 YNYLNSYTNQNDDSY 477
YNY N+Y N N +Y
Sbjct: 92 YNYNNNYNNYNKHNY 106
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 433 YNYLNSYTNQNDDSY 477
YNY N+Y N N +Y
Sbjct: 92 YNYNNNYNNYNKHNY 106
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 433 YNYLNSYTNQNDDSY 477
YNY N+Y N N +Y
Sbjct: 92 YNYNNNYNNYNKHNY 106
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 433 YNYLNSYTNQNDDSY 477
YNY N+Y N N +Y
Sbjct: 92 YNYNNNYNNYNKHNY 106
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.4 bits (48), Expect = 2.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 433 YNYLNSYTNQNDDSY 477
YNY N+Y N N +Y
Sbjct: 325 YNYNNNYNNYNKHNY 339
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.4 bits (48), Expect = 2.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 433 YNYLNSYTNQNDDSY 477
YNY N+Y N N +Y
Sbjct: 325 YNYNNNYNNYNKHNY 339
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.8 bits (44), Expect = 6.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 432 KTNETRMNCLKTDIYF 385
KTN +CLK D+ F
Sbjct: 222 KTNTGEYSCLKVDLLF 237
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.8 bits (44), Expect = 6.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 432 KTNETRMNCLKTDIYF 385
KTN +CLK D+ F
Sbjct: 222 KTNTGEYSCLKVDLLF 237
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.4 bits (43), Expect = 8.5
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 403 QTVHSRFICLYNYLNS-YTNQN-DDSYFLDKKPRYTKYLGI 519
+T+H+ YNY N+ Y N N +++Y + K Y + I
Sbjct: 321 KTIHNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIINI 361
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,184
Number of Sequences: 438
Number of extensions: 3050
Number of successful extensions: 22
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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