Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13k06
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    28   1.4  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   3.1  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    26   4.1  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    26   5.5  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   5.5  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    25   9.5  
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    25   9.5  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 489 VMESEMMPSG-DGQTMVKDWWCKSRNGFPQRLMLPLGTI 376
           ++  E + SG D +T+  ++WCK R+ F +     LGT+
Sbjct: 283 IIAEESLDSGSDTETLYLNYWCKIRHFFREGFAEFLGTL 321


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = -3

Query: 475 NDAFRRWPDNGQGLVVQVSQR---IPSETYAAPRYDWRFGDADVRHRVAG 335
           N + R W +  Q L    S R   I S  +  PRY W +G   +  R +G
Sbjct: 100 NGSIREWVEIPQHLDYSFSVRLCSIYSIIFRPPRYGWNYGSIVINLRDSG 149


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -1

Query: 156 DLGMSNTSKTVDTSEMVMM-KDDLTYLDLGHAGQEDLQRRHDDEQHDELITR 4
           D GM NT    D S +V   +D  TY +      E L  R DD     LI R
Sbjct: 75  DTGM-NTEYNDDNSSLVNTPRDSTTYAETNSPNTEKLAGRDDDRSLLNLIDR 125


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 126 VDTSEMVMMKDDLTYLDLGHAGQEDLQRRHDD 31
           +D +E V   D  TY D+ HA  EDL +  DD
Sbjct: 365 LDWNENVKKND--TYYDILHAILEDLSKHQDD 394


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 126 VDTSEMVMMKDDLTYLDLGHAGQEDLQRRHDD 31
           +D +E V   D  TY D+ HA  EDL +  DD
Sbjct: 365 LDWNENVKKND--TYYDILHAILEDLSKHQDD 394


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 150 GMSNTSKTVDTSEMVMMKDDLTYLDLGHAGQEDLQRRHD 34
           GM N         M+ ++D+ ++LDL     E L RR+D
Sbjct: 111 GMGNALGVNYPKAMIEVRDNQSFLDLSIRQIEYLNRRYD 149


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -3

Query: 445 GQGLVVQVSQRIPSETYAAPRYDWRFGDADVRHRVAGPHRYAL 317
           G+ LVV   + +   + A P + W   D  + H V  P  + L
Sbjct: 227 GRSLVVCGEEGLDEISPAGPTHTWLVRDGTITHEVYTPESFHL 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,584,841
Number of Sequences: 5004
Number of extensions: 55111
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)