Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13k06
         (654 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB046843-1|BAB13449.2| 1236|Homo sapiens KIAA1623 protein protein.     31   4.7  
Z11793-1|CAA77836.1|  381|Homo sapiens selenoprotein P protein.        30   8.3  
DQ022288-1|AAY26400.1|  381|Homo sapiens selenoprotein P, plasma...    30   8.3  
BC058919-1|AAH58919.1|  381|Homo sapiens selenoprotein P, plasma...    30   8.3  
BC046152-1|AAH46152.1|  381|Homo sapiens selenoprotein P, plasma...    30   8.3  
BC040075-1|AAH40075.1|  381|Homo sapiens selenoprotein P, plasma...    30   8.3  
BC015875-1|AAH15875.1|  381|Homo sapiens selenoprotein P, plasma...    30   8.3  

>AB046843-1|BAB13449.2| 1236|Homo sapiens KIAA1623 protein protein.
          Length = 1236

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 193  QHEVR*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPG 77
            Q + R R + ++R RH EH   R H   G +E R+   G
Sbjct: 902  QQQQRRRREEEERQRHAEHHARREHDSGGREEARAEGSG 940


>Z11793-1|CAA77836.1|  381|Homo sapiens selenoprotein P protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +1

Query: 304 VQCGQEHTGADRRHDDVHLHLQTSNRTEGQHKSLRESVARLAPPVLDHCLAISGRH 471
           V+    H   +  H+  H HL +S  +E Q      +    APP L H     G+H
Sbjct: 198 VETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQH 253


>DQ022288-1|AAY26400.1|  381|Homo sapiens selenoprotein P, plasma, 1
           protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +1

Query: 304 VQCGQEHTGADRRHDDVHLHLQTSNRTEGQHKSLRESVARLAPPVLDHCLAISGRH 471
           V+    H   +  H+  H HL +S  +E Q      +    APP L H     G+H
Sbjct: 198 VETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQH 253


>BC058919-1|AAH58919.1|  381|Homo sapiens selenoprotein P, plasma, 1
           protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +1

Query: 304 VQCGQEHTGADRRHDDVHLHLQTSNRTEGQHKSLRESVARLAPPVLDHCLAISGRH 471
           V+    H   +  H+  H HL +S  +E Q      +    APP L H     G+H
Sbjct: 198 VETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNTPTHPAPPGLHHHHKHKGQH 253


>BC046152-1|AAH46152.1|  381|Homo sapiens selenoprotein P, plasma, 1
           protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +1

Query: 304 VQCGQEHTGADRRHDDVHLHLQTSNRTEGQHKSLRESVARLAPPVLDHCLAISGRH 471
           V+    H   +  H+  H HL +S  +E Q      +    APP L H     G+H
Sbjct: 198 VETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNTPTHPAPPGLHHHHKHKGQH 253


>BC040075-1|AAH40075.1|  381|Homo sapiens selenoprotein P, plasma, 1
           protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +1

Query: 304 VQCGQEHTGADRRHDDVHLHLQTSNRTEGQHKSLRESVARLAPPVLDHCLAISGRH 471
           V+    H   +  H+  H HL +S  +E Q      +    APP L H     G+H
Sbjct: 198 VETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQH 253


>BC015875-1|AAH15875.1|  381|Homo sapiens selenoprotein P, plasma, 1
           protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +1

Query: 304 VQCGQEHTGADRRHDDVHLHLQTSNRTEGQHKSLRESVARLAPPVLDHCLAISGRH 471
           V+    H   +  H+  H HL +S  +E Q      +    APP L H     G+H
Sbjct: 198 VETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQH 253


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,383,001
Number of Sequences: 237096
Number of extensions: 2090956
Number of successful extensions: 5275
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5274
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)