Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13k05
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 120 1e-28
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 112 5e-26
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 87 2e-18
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 87 3e-18
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 84 1e-17
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 61 2e-10
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 30 0.25
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 30 0.33
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 29 0.43
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 29 0.43
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 29 0.57
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 27 2.3
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.3
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.3
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 26 4.0
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 26 4.0
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 26 4.0
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 26 4.0
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.0
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 25 9.3
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 25 9.3
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 25 9.3
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 25 9.3
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 120 bits (290), Expect = 1e-28
Identities = 65/193 (33%), Positives = 108/193 (55%), Gaps = 5/193 (2%)
Frame = -2
Query: 642 LYVADEVQXGFGRTGDHFWGFETHGVKPDIVTMAKGIGNGFPLAAVVTTKEI--AANHAK 469
L + DE Q G GRTG F FE HG+ PDI+T++K +G G LAAV+T++EI
Sbjct: 247 LLIIDEAQTGIGRTGSMF-SFEHHGIVPDILTLSKSLGAGTALAAVITSEEIEKVCYDNG 305
Query: 468 AAYFNTFGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQKQHPVIGDVRGQ 289
++ T +P+ + +G VL+V++ + L + +K+ GE L+ L+ +HP+I DVRG
Sbjct: 306 FVFYTTHASDPLPAAIGSTVLKVVKRDNLVEKAKISGELLRSDLLRLKDKHPLIVDVRGL 365
Query: 288 GLMIGVEL---VEPGTKTPLTTSKVNDIHENIKDNGVLIARGGRFNNVFRIKPPMCITKQ 118
GL+ G+E+ +P + + + D + N ++ G VFRI PP+ +T +
Sbjct: 366 GLLQGIEIASCTDPSKPSDFLGTVIGDKCLELGMNCNIVHLRG-IGGVFRIAPPLTVTDE 424
Query: 117 DVDFGISIINDAI 79
++ I I + A+
Sbjct: 425 EIHKAIEIFDSAL 437
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 112 bits (269), Expect = 5e-26
Identities = 68/189 (35%), Positives = 110/189 (58%), Gaps = 1/189 (0%)
Frame = -2
Query: 642 LYVADEVQXGFGRTGDHFWGFETHGVKPDIVTMAKGIGNG-FPLAAVVTTKEIAANHAKA 466
L++ADEVQ G RTG E VKPD+V + K I G +P++AV++++EI N
Sbjct: 242 LFIADEVQTGVARTGKMLC-IEHSNVKPDVVILGKAISGGVYPVSAVLSSREIMLNFEPG 300
Query: 465 AYFNTFGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQKQHPVIGDVRGQG 286
+ +T+GGNP+ + V A LEV++EE L + + V+GE F L++ + P++ VRG+G
Sbjct: 301 THGSTYGGNPLGAAVSIAALEVVKEEKLTERAAVLGEKFRTALIECKS--PIVQKVRGRG 358
Query: 285 LMIGVELVEPGTKTPLTTSKVNDIHENIKDNGVLIARGGRFNNVFRIKPPMCITKQDVDF 106
L+ V + E +KT T+ D+ ++ GVL N+ R PP+ IT++D+
Sbjct: 359 LLNAVVIDE--SKTNGRTAW--DLCLIMRSRGVLAK--PTHGNIIRFSPPLVITEEDLMK 412
Query: 105 GISIINDAI 79
GI +I ++
Sbjct: 413 GIEVIKKSL 421
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 87.4 bits (207), Expect = 2e-18
Identities = 62/201 (30%), Positives = 97/201 (48%), Gaps = 13/201 (6%)
Frame = -2
Query: 636 VADEVQXGFGRTGDHFWGFETHGVKPDIVTMAKGIGNGF-PLAAVVTTKEI---AANHAK 469
V DE+Q G GRTG FW E + PD + AKG G P A + T+E+ A N +
Sbjct: 274 VLDEIQTGCGRTGK-FWACEYENIIPDCIAFAKGFSGGLIPFAGYIATEELWNAAYNSLE 332
Query: 468 AAYFNT--FGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQKQHP-VIGDV 298
A+ +T + N + G A ++ I + L + +G +L LQ + P V+ DV
Sbjct: 333 TAFLHTATYQENTLGLAAGVATIDYIVQNDLLSRCRKLGGIMFDRLNKLQTKFPHVMKDV 392
Query: 297 RGQGLMIGVEL------VEPGTKTPLTTSKVNDIHENIKDNGVLIARGGRFNNVFRIKPP 136
RG+G+++G+E V+ T VND+ + V + +VFR PP
Sbjct: 393 RGRGMIVGIEFYPIPESVQEEFGEYYATPIVNDLADTYH---VQVYCSLNNPSVFRFLPP 449
Query: 135 MCITKQDVDFGISIINDAIKK 73
+ I + D+D G+S + A+ K
Sbjct: 450 LTIPEADLDEGLSAVESAVAK 470
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 86.6 bits (205), Expect = 3e-18
Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 3/190 (1%)
Frame = -2
Query: 636 VADEVQXGFGRTGDHFWGFET--HGVKPDIVTMAKGIGNGFPLAAVVTTKEIAANHAKAA 463
+ DE+Q G GR+GD W PDI+T+AK + NG P+ A + + +IAA
Sbjct: 261 IYDEIQCGLGRSGD-LWAHSIVKDVASPDIITVAKPLANGLPIGATIVSSKIAAEIHPGE 319
Query: 462 YFNTFGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQKQHP-VIGDVRGQG 286
+ +TFGGNP+A VG + + + QN + + + D ++P +I G+G
Sbjct: 320 HGSTFGGNPVACRVGTFCVNELGSSKILQNVRKQHKALTSRFDDFVAKYPNLIRGYAGRG 379
Query: 285 LMIGVELVEPGTKTPLTTSKVNDIHENIKDNGVLIARGGRFNNVFRIKPPMCITKQDVDF 106
L++G++ EP K E + G+L+ GG NN R+ P + + + +
Sbjct: 380 LLLGLQFTEPPAK----------FIELARQQGLLLLPGG--NNNTRVLPSLNVKDEVIAK 427
Query: 105 GISIINDAIK 76
G+ I+ +K
Sbjct: 428 GLDIMESTLK 437
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 84.2 bits (199), Expect = 1e-17
Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 14/206 (6%)
Frame = -2
Query: 642 LYVADEVQXGFGRTGD-HFWGFETHGVKPDIVTMAKGIGNGF-PLAAVVTTKEIA----A 481
++ DEV G GRTG H W E GV PDI ++AK +G G+ P++ + I
Sbjct: 252 IFYLDEVMSGIGRTGTMHAW--EQEGVTPDIQSIAKCLGGGYQPISGALVGHRIMNVFEQ 309
Query: 480 NHAKAAYFNTFGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQKQHPVIGD 301
A A F T+ +P+A + AV ++ + L + + +G+Y +L + HP +G+
Sbjct: 310 KDAAMAGFFTYQAHPIACSAALAVQTILRRDHLVERAAEMGKYLSEKLHETFDSHPNVGN 369
Query: 300 VRGQGLMIGVELV-EPGTKTPLTTS-KVNDIHENIK-DNGVLIARG-----GRFNNVFRI 145
+RG+GL G+E+V + TK KV + I ++GV + G G + +
Sbjct: 370 IRGRGLFWGLEIVKDKATKECFPPEYKVGSLANKIGCEHGVFVYPGMGTIDGTRGDHVLL 429
Query: 144 KPPMCITKQDVDFGISIINDAIKKVV 67
PP IT++ +D + ++ I V
Sbjct: 430 APPYIITREQIDELVEALSKTITSTV 455
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 60.9 bits (141), Expect = 2e-10
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Frame = -2
Query: 639 YVADEVQXGFGRTGDHFWGFETHGVK--PDIVTMAKGIGNGFPLAAVVTTKEIAANHAKA 466
++ DEVQ G G TG W E + PD+VT +K AA + ++A
Sbjct: 299 FIVDEVQTGVGSTGT-LWAHEQWNLPYPPDMVTFSKKFQ-----AAGIFYHDLALRPHAY 352
Query: 465 AYFNTFGGNPMASTVGKAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQKQHP-VIGDVRGQ 289
+FNT+ G+P + + +L+ I+++ L N K VG++ L +L ++HP I ++RG+
Sbjct: 353 QHFNTWMGDPFRAVQSRYILQEIQDKDLLNNVKSVGDFLYAGLEELARKHPGKINNLRGK 412
Query: 288 G 286
G
Sbjct: 413 G 413
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 30.3 bits (65), Expect = 0.25
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +2
Query: 131 HIGGFILNT--LLKRPPRAMSTPLSLIFSWISLTLEVVSGVLVPGSTSSTPIMRPCPLTS 304
H G F++N L P T ++ T EV++GV+ S +P+ PLT
Sbjct: 105 HYGRFVMNLRKALTSTPNVTVTEATVNELLRDETGEVITGVVTSSKKSESPVEYKAPLTI 164
Query: 305 PITGC 319
GC
Sbjct: 165 VCDGC 169
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 29.9 bits (64), Expect = 0.33
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 128 MHIGGFILNTLLKRPPRAMSTPLSLIFSWISLTLEVVSGVLVPGSTSSTPIMRP-CPLTS 304
MHI +LN LK PP ++S S I S S T V + PG + S P+ P P++
Sbjct: 195 MHIINLLLNGSLKSPPVSISP--SFIASAAS-TSSVSAPSQYPGLSRSPPVQAPNIPVSD 251
Query: 305 P 307
P
Sbjct: 252 P 252
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 29.5 bits (63), Expect = 0.43
Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Frame = +1
Query: 73 FFDRIIDDRNAEVDV-----LFSDAHWRFYSEYIIKASTTSDEHSVVFDILMDIINFGSG 237
F DR++D+ NAEV + + W Y+ I+ + + +D L++ GS
Sbjct: 699 FTDRLVDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVYGIAYDELVEDPLLGSK 758
Query: 238 QRCLSSGFNKLHSDHEALSPDIANHWVLLLKIHQLPDEVFADYLTV 375
+R L S +D++ + + N +++ + ++ + +Y TV
Sbjct: 759 RRELVSVAAGRLADNQMIVYNKKNGYLIPKDLGRIASNYYINYQTV 804
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 29.5 bits (63), Expect = 0.43
Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Frame = +1
Query: 181 DEHSVVFDIL-MDIIN------FGSGQR--CLSSGFNKLHSDHEALSPDIANHWVLLLK- 330
DEHS+ D++ +DI + FG G C G N L S N+ ++LL
Sbjct: 347 DEHSISRDLVSVDICHIFNEMIFGKGGHLHCDPHGGNVLIRSKPKNSKSPRNYEIVLLDH 406
Query: 331 --IHQLPDEVFADYLTVLLQSFFFNNLQYSFSNSRSHRVSTESVKVGSLRVIG 483
+P E+ DY + L FN F + VS E+ + + + G
Sbjct: 407 GLYRDIPHELQVDYANMWLNIINFNEKNLKFYAKKVANVSDENFPIFATAITG 459
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 29.1 bits (62), Expect = 0.57
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 169 STTSDEHSVVFD---ILMDIINFGSGQRCLSSGFNKLHSDHEALSPDIANHWVLLL 327
S S+E SV+FD +L I++ S +S F +HS HE PDIA + +L
Sbjct: 776 SPDSEEGSVLFDDGELLCGILDKSSFG---ASAFGLVHSVHELYGPDIAGRLLSVL 828
>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -3
Query: 224 LMISMRISKTTECSSLVVDALIMYSE*NLQCASLNRTSTSAFRSSMMRSKKLSTKCVIEI 45
L I I + T C+ V +MY N CA L+ ST + M K+ C+I +
Sbjct: 230 LSIMYMIPQITHCTP--VSRSVMYGIQNGFCAVLSTLSTFSNELHTMPIKRAYIYCIISV 287
Query: 44 LARLKVFIFV 15
+ + V
Sbjct: 288 AISFSICVIV 297
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = -2
Query: 525 GFPLAAV-VTTKEIAA---NHAKAAYFNTFGGNPMASTVGKAVLEVIEEE 388
GFP+ V T+ I + N A+ A + G P+ S++GKA+LE+ EE
Sbjct: 436 GFPVGFVNAVTRHIPSPRENAARKASQSYIG--PINSSIGKAILEMSREE 483
>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 2.3
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -3
Query: 224 LMISMRISKTTECSSLVVDALIMYSE*NLQCASLNRTSTSAFRSSMMRSKKLSTKCVIEI 45
L I I + T C+ V +MY N CA L+ ST + M K+ C+I +
Sbjct: 230 LSIMYMIPQITHCTP--VSRSVMYGIQNGFCAVLSTLSTFSNELHTMPIKRAYIYCIISV 287
Query: 44 LARLKVFIFV 15
+ + V
Sbjct: 288 AISFSICVIV 297
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 26.2 bits (55), Expect = 4.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 567 VKPDIVTMAKGIGNGFPLAA 508
+KPD+ T+ K +G G P A
Sbjct: 261 LKPDLTTLGKYLGGGLPFGA 280
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 169 STTSDEHSVVFDILMDIINFGSGQRCLSSGFNKLHSDHEALSPDIANHWVLLLKIHQL 342
S T+ +HS + + N G++ +SS + SD PD H L+ K +QL
Sbjct: 121 SVTAHDHSDTSPLPITSSNQKEGKKNVSSIDVSMVSDSSEFKPDSLQHEKLVKKCNQL 178
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +1
Query: 109 VDVLFSDAHWRFYSEYIIKASTTSDEHSVVFDILMDII 222
V +LF D W F++ + +ST++ E + D + ++
Sbjct: 195 VGILFEDDLWYFFNTLYMLSSTSAIEFAYFLDSIFTVV 232
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 4.0
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +2
Query: 242 GVLVPGSTSSTPIM-----RPCPLTSPITGCCF*RSINCLMKYSPTTLLFCCSPSSSI 400
G+L+ GST ++ I+ +P L +TG R I C+ + T + + C SSI
Sbjct: 145 GLLLSGSTDASLIVWDVSSQPSRLLYKLTGHS--RGIECITRQPNTDIFWTCGSESSI 200
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 7.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 488 ISLVVTTAARGNPLPIPLAIVTMSGFTPCVSKPQK*SPVRPKPXCTS 628
+S T R P + A +SGF P VS P+K + ++ K TS
Sbjct: 16 VSSAPTVNERSYPFLLD-ASAGVSGFNPVVSSPEKKARMKYKKNSTS 61
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 9.3
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -2
Query: 312 VIGDVRGQGLMIGVELVEPGTKTPLTTSKVNDIHENIKDNG-VLIARGGRFNNVFRIKPP 136
V+ + G+ + I E +K P T + + + + N VLIA FNN+F+ P
Sbjct: 659 VVKNDEGEPIEIIAEYDASSSKKPKTF--IQWVSRDKESNSPVLIAETRLFNNLFKCDNP 716
Query: 135 MCITKQDV 112
+ +Q++
Sbjct: 717 AALKEQEL 724
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = +2
Query: 218 SLTLEVVSGVLVPGSTSSTPIMRPCPLTSPI 310
S T VS P STS PI P T P+
Sbjct: 631 SFTSYTVSATATPTSTSHIPIPTVLPPTQPV 661
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 194 LSLIFSWISLTLEVVSGVLVPGSTSSTPIMRPCPLTSPITGCC 322
LSL IS+ + S VL GS + + + LTSPI C
Sbjct: 151 LSLELMRISIWIGNYSHVLAFGSRAKSTVSAAMELTSPIYAYC 193
>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 594
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = -2
Query: 426 TVGKAVLEVIEEEGLQQNSKVVGEYFIRQLMDLQKQHPVIGDV 298
TVG + + + E G++ + V G+Y +R L+D + +P + ++
Sbjct: 10 TVGTYLAQRLVEIGIKNHFVVPGDYNLR-LLDFLEYYPGLSEI 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,018
Number of Sequences: 5004
Number of extensions: 53645
Number of successful extensions: 197
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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