Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13k04
         (314 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    27   0.89 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   3.6  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    24   4.7  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        23   8.3  
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    23   8.3  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    23   8.3  
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    23   8.3  

>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 26.6 bits (56), Expect = 0.89
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 184 PSWSPLGRGCCQLQNGFVXTVSCTYLFSFK 95
           PS SP+   CC+ Q  +V +V    L +FK
Sbjct: 540 PSMSPMQIWCCESQERYVLSVKSEDLDTFK 569


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = -2

Query: 157 CCQLQNGFVXTVS--CTYLFS 101
           C QLQNGF+ T    CT L S
Sbjct: 520 CEQLQNGFIPTCERLCTILLS 540


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 114 VHDTVSTNPFCSWQQPRP 167
           VH   STN F SW + +P
Sbjct: 279 VHSRFSTNTFPSWDRAQP 296


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 300 RVSVVTCLCGVAPELNQCHFVPGRIQSH-CVSRGSASVGRHL 178
           R+S+V  LC  APEL +   + G+   H   + G   V ++L
Sbjct: 119 RLSIVQLLCDKAPELIRKKDLQGQTPLHRAAAVGKIQVVKYL 160


>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = -3

Query: 117 VPIYLVLSNCKFCFNLSI 64
           +PI++ ++  ++CFNLS+
Sbjct: 52  MPIFMDIAFIEYCFNLSL 69


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
            subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 159  PRPSGDQDGGRRMQTHAKRNGTVSDLAQNGTGLVPEL 269
            P P   ++ G+R Q HAKR+   + L    +G+V ++
Sbjct: 906  PIPLDHEELGQRTQLHAKRD-VSTPLRSTESGIVDQV 941


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 233 VGYSPIAFRVGLHPSA 186
           V +SP+A R  LHPS+
Sbjct: 152 VYFSPLALRAHLHPSS 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,306,995
Number of Sequences: 5004
Number of extensions: 23462
Number of successful extensions: 52
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)