Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13k04
         (314 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   2.0  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   4.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   4.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   6.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   8.1  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 236 QVGYSPIAFRVGLHPSAAILVAAG 165
           Q   SP+  RVG+H  A +    G
Sbjct: 357 QTTNSPVDMRVGIHTGAVLAGVLG 380


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = +1

Query: 1   YVYNFLFNMNRAEIPI*PLCNN 66
           Y  N++ N+ +  +P+   C N
Sbjct: 105 YYKNYIINIEQIPVPVPIYCGN 126


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = +1

Query: 1   YVYNFLFNMNRAEIPI*PLCNN 66
           Y  N++ N+ +  +P+   C N
Sbjct: 346 YYKNYIINIEQIPVPVPIYCGN 367


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 130  LQTHFVAGSNHA 165
            ++TH VAGSN A
Sbjct: 1572 VETHNVAGSNQA 1583


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 130  LQTHFVAGSNHA 165
            ++TH VAGSN A
Sbjct: 1568 VETHNVAGSNQA 1579


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +3

Query: 174 DQDGGRRMQTHAK-RNGTVSDLAQNGTGLVPELHHTNTSPQKHDD 305
           +QD       H + R+ + SD  QN      + HH++ S  +H++
Sbjct: 419 NQDNNHYNHNHNQARHSSKSD-NQNNNQHNDQAHHSSKSNNRHNN 462


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 117 HDTVSTNPFCSWQQPRPSG 173
           H  V T+P    QQ  P G
Sbjct: 232 HQGVVTSPLSQQQQAAPQG 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,234
Number of Sequences: 438
Number of extensions: 1823
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)