Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13k03
(696 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual 33 0.030
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 29 0.84
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe... 28 1.5
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 5.9
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 26 5.9
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 26 5.9
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 26 5.9
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 25 7.8
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom... 25 7.8
>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 33.5 bits (73), Expect = 0.030
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 287 KKWDTCAPEAILSAAGGKLTDILGNFYKYGANVTKPNKTGVLAA 156
K WD ++ AGG ++D+ G +G T N GV+AA
Sbjct: 283 KIWDHAGGSLLVEEAGGVVSDMFGKPLDFGVGRTLKNNNGVIAA 326
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 28.7 bits (61), Expect = 0.84
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 473 TPAPPPESIVITTTRSHSNPVVEEALK 393
TP PPP + + +T S P EE +K
Sbjct: 318 TPLPPPPPVAVNSTNDESAPQNEELVK 344
>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = -2
Query: 275 TCAPEAILSAAGGKLTDILGNFYKYGANVTKPNKTGVLAAVNNELHSYALERIPEKLQ 102
+C P A+L+ G + DI+ G NKT LAA + H +A ER +++Q
Sbjct: 197 SCFPAAVLAGLTGHVGDIIDGCAAPG------NKTTHLAACFPKSHIFAFERDAKRVQ 248
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.8 bits (54), Expect = 5.9
Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 6/154 (3%)
Frame = -2
Query: 599 IAVNETPVAGVIHQP---YYKNIVEGDKKIGRTIWGL-HGVGVGGFTPAPPPESIVITTT 432
+ ++ P+AG +H P + + +K I H V VGG TP P
Sbjct: 812 VLLSNHPIAGGVHLPDLTVVTPVFDNNKDIIFYCAARGHMVDVGGITPGSMP-------- 863
Query: 431 RSHSNPVVEEALKVMNASKVLRVGGAGYKVL-QLLEGNASIYVFASPGCKKWDTCAP-EA 258
S+S + EE + KV++ G K L QLL + Y S D + +A
Sbjct: 864 -SNSKAIYEEGAAI-KTFKVVKAGTFDEKGLTQLLFDEPAKYPDCSGSRTLRDNISDVKA 921
Query: 257 ILSAAGGKLTDILGNFYKYGANVTKPNKTGVLAA 156
+LSA + + +YG ++ + + G+ AA
Sbjct: 922 MLSACHRGRSMVEKLVVEYGLDIVQRSMYGIQAA 955
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 25.8 bits (54), Expect = 5.9
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -2
Query: 221 LGNFYKYGANVTKPNKTGVLAAVNNE 144
L +F++ N+T N++ +LA +NN+
Sbjct: 396 LDDFFQLEDNITGLNRSAILACINNK 421
>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.8 bits (54), Expect = 5.9
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = -1
Query: 489 GCRWIYPGSSS*IHRNYNY*KPFESCCGGGTKSYECFKGA*GWWSWLQGPAIIRRKCINI 310
G W G S + N + KP+E C +++E +GA G + L PA+ I
Sbjct: 412 GFDWREAGCSMCLGMNPDQLKPYERCASTSNRNFEGRQGAKG-RTHLVSPAMAAAAAIKG 470
Query: 309 CFC 301
C
Sbjct: 471 HLC 473
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 25.8 bits (54), Expect = 5.9
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +3
Query: 399 CLLHNRIRMASSSCNYDGFRRRSRGKSTYTHTMQSPNCPTDFLVTFNYIFIVWLMDDTSN 578
CLL R +S D ++ R K + + + P D NY+F V L ++
Sbjct: 297 CLLVARQTDVENSIRLDFISKKLR-KRLNGDVVHNLDVPHDKSYKSNYLFSVVLSPHQAS 355
Query: 579 WCLIHSYTN 605
W + +S+ N
Sbjct: 356 WNIYNSFDN 364
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 25.4 bits (53), Expect = 7.8
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +2
Query: 512 SYRFSCHLQLYFYSMVDG*HQQLVS-HSQL-YQLVQSH-VLRILEYILKFHQVDPPTLQY 682
+++ SC L+ +F S + H S ++ + Y L+ S IL Y +PPT+ +
Sbjct: 45 NFKVSCLLK-HFNSKIINDHPLSGSCYTDIGYALINSRKACFILSYRQSLGTAEPPTITF 103
Query: 683 PLP 691
PLP
Sbjct: 104 PLP 106
>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 221 LGNFYKYGANVTKPNKTGVLAAVNNE 144
L Y YGA V P K+G+L N+
Sbjct: 211 LQQIYGYGATVWSPLKSGILTGKYND 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,832
Number of Sequences: 5004
Number of extensions: 68990
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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