Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13k02
(315 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 29 0.13
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom... 28 0.29
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 0.67
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 24 6.3
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 24 6.3
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 24 6.3
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S... 23 8.3
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ... 23 8.3
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po... 23 8.3
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 23 8.3
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 29.5 bits (63), Expect = 0.13
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -2
Query: 302 NNLPKHDIGENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIP 150
++L + + NN D+ ++ + K AD EI IEN DL +P
Sbjct: 231 DSLRERFVDNNNSDYI-FNVSYHKKIPADGFSLYTREIWDTIENNKDLDLP 280
>SPBC19C2.02 |pmt1||DNA methyltransferase
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 330
Score = 28.3 bits (60), Expect = 0.29
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -2
Query: 302 NNLPKHDIGENNEDFEDYDADFETKTSADDSG-NMLEEIMQCIENKNDLSIPN 147
NNLP++ + EN + FE+ A E + + G N++E I+ + N +IPN
Sbjct: 112 NNLPEYILIENVQGFEESKAAEECRKVLRNCGYNLIEGIL----SPNQFNIPN 160
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 27.1 bits (57), Expect = 0.67
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +2
Query: 167 FYFQCTALFLPTCFRCHLRLFLSQSQRHNLRNLHYFHRYRVSVNYSSL 310
F+ Q T + CF L L LH+FH + ++ + SL
Sbjct: 28 FFLQMTPFYSILCFLSFFALLLHLPCSIYSHTLHFFHHFTIACYHYSL 75
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 23.8 bits (49), Expect = 6.3
Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = -2
Query: 293 PKHDI-GENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPERL 129
P H I E+NE +Y + + + S ++ ++ EE + +++KN+ + + PE++
Sbjct: 183 PIHRIDSEHNEP--EYHTESKNEESEHNTKSIREEPIHHVDSKNEEPVYSKIPEKM 236
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 23.8 bits (49), Expect = 6.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 73 KWCYSFKNIILSSP 114
KWCY + I+SSP
Sbjct: 1200 KWCYYIGSYIMSSP 1213
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 242 DFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPER 132
+FET S + GN+LE++ + + NK +PE+
Sbjct: 96 EFETVESKGE-GNLLEQVARTVYNKRHNISEVSEPEK 131
>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 23.4 bits (48), Expect = 8.3
Identities = 11/33 (33%), Positives = 13/33 (39%)
Frame = -2
Query: 311 AEKNNLPKHDIGENNEDFEDYDADFETKTSADD 213
A NN P G+ E D + E K DD
Sbjct: 156 ASSNNTPSIQDGKQTEQVSSKDGENEKKKDNDD 188
>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 400
Score = 23.4 bits (48), Expect = 8.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 83 THLKI*SYLRRFYLDTDVPGLN*VYL 160
+ +K+ Y YLD D+PG++ V L
Sbjct: 320 SEIKVIQYSPPQYLDYDIPGMDTVVL 345
>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 458
Score = 23.4 bits (48), Expect = 8.3
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Frame = -3
Query: 124 QIETAKIRLYF*MSNTILFYIKHLNYF----FRLTSPN 23
Q + + ++ + N +Y KHLNY+ FR T N
Sbjct: 379 QFRKSLLSMFTQLDNGGFYYSKHLNYYKVRSFRFTPVN 416
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 23.4 bits (48), Expect = 8.3
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 269 NEDFE-DYDADFETKTSADDSGNMLEEIMQCIENKNDL 159
+ED + YD++ E +D G LE + ++N +D+
Sbjct: 335 DEDIDYTYDSEAEWVADEEDDGEDLESEDEEVDNSDDI 372
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,226,781
Number of Sequences: 5004
Number of extensions: 24147
Number of successful extensions: 81
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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