Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13k02
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0358 + 16725417-16725422,16725789-16725858,16727825-167286... 29 1.0
12_01_0919 - 9086879-9087064,9087842-9087923,9088357-9089553,908... 27 2.3
10_08_0055 - 14505747-14506934 27 2.3
02_05_0036 - 25292150-25293124,25294021-25294206,25294704-252948... 27 2.3
12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219... 27 3.1
11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460 27 4.1
08_02_0431 + 17053928-17054189,17054296-17054564,17054661-170548... 27 4.1
08_02_0473 + 17586507-17587004,17587146-17588145,17588314-175885... 26 5.4
05_04_0096 - 17931061-17931435,17931539-17931620,17932319-179324... 26 5.4
03_05_0190 - 21770610-21770641,21770741-21770811,21771058-217711... 26 5.4
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 26 7.1
09_01_0099 + 1493177-1493453,1494961-1495175,1495490-1496074 25 9.4
05_03_0277 - 11509279-11510118,11514100-11514558 25 9.4
04_04_0229 - 23766488-23766946,23767901-23768128 25 9.4
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682... 25 9.4
>11_04_0358 +
16725417-16725422,16725789-16725858,16727825-16728693,
16729109-16729198,16730071-16730356,16730573-16730592
Length = 446
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 263 DFEDYDADFETKTSADDSGNMLEE 192
D +DYD DFE ++DD G E
Sbjct: 88 DDDDYDIDFEVDATSDDDGGFTVE 111
>12_01_0919 -
9086879-9087064,9087842-9087923,9088357-9089553,
9089598-9089961,9090086-9090188,9090234-9090479
Length = 725
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 269 NEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLS 156
+E FE YD DF T G+ ++ ++ + +KND+S
Sbjct: 454 HEGFESYDIDFSTADGVSVLGDAVDLVI--LWHKNDIS 489
>10_08_0055 - 14505747-14506934
Length = 395
Score = 27.5 bits (58), Expect = 2.3
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = -2
Query: 302 NNLPKHDIGENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPERLCP 123
+ LP+ + E E+ ED D D+E + + M+E ++ + N + + +RLC
Sbjct: 261 DTLPETNPQELEEEEEDDDDDYEDDQA--QAAAMVEHLLIAADRYNLERLKLICEDRLCK 318
Query: 122 NRNGED--KIIFLNE*H 78
+ +GE I+ L E H
Sbjct: 319 HIDGESVATILALAEQH 335
>02_05_0036 -
25292150-25293124,25294021-25294206,25294704-25294874,
25295135-25295353,25295461-25295712,25295802-25295903,
25296487-25296684,25296762-25297046,25297640-25297709,
25297797-25297970,25298825-25298952,25299059-25299163,
25299686-25300030,25300361-25300563,25300964-25301045,
25301667-25301744
Length = 1190
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 269 NEDFEDYDADFETKTSA-DDSGNMLEEIMQCIENKNDLSIPNLDPER 132
NE+ ++ D ET+ + DD LEE + ++ K L NL+ ER
Sbjct: 6 NENSKEAKQDDETRQNKQDDEEARLEEYKKLVDQKTALRRSNLNSER 52
>12_01_0292 +
2193309-2193338,2193565-2193640,2193744-2195203,
2195479-2195505,2195794-2196024,2196523-2196692,
2197278-2197421,2198036-2198083,2198503-2198566
Length = 749
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 305 KNNLP-KHDIGENNEDFEDYDADFETKTSADDSG 207
K NLP + D G++ +F+D +F+ + DD G
Sbjct: 191 KFNLPPEDDFGDDGSEFDDEFDEFDDEDDFDDDG 224
>11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460
Length = 515
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -2
Query: 293 PKHDIGENNEDFEDYDADFETKTSADDSG 207
P+ D G++ +F+D +F+ + DD G
Sbjct: 198 PEDDFGDDGSEFDDEFDEFDDEDDFDDDG 226
>08_02_0431 +
17053928-17054189,17054296-17054564,17054661-17054864,
17054974-17055066,17055160-17055255,17055339-17055683,
17055935-17056018,17056106-17056171,17056268-17056333,
17056436-17056501,17056635-17056700,17056798-17056863,
17056981-17057028,17057107-17057169,17057255-17057320,
17057483-17057542,17057888-17057935,17058019-17058255,
17058346-17058366
Length = 741
Score = 26.6 bits (56), Expect = 4.1
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = -2
Query: 287 HDIGENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPERLCPNRNGE 108
HD GE NED +D D D +D+ + ++ + E+ D+ I N+ E P G+
Sbjct: 42 HDSGEGNEDIDD-DFDINDGEGNEDTNDDVDIDDEGNED-TDVDI-NVRVENGAPETRGK 98
Query: 107 DKI 99
K+
Sbjct: 99 TKL 101
>08_02_0473 +
17586507-17587004,17587146-17588145,17588314-17588566,
17588647-17588757,17588845-17588905,17588994-17589086,
17589164-17589349
Length = 733
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -2
Query: 269 NEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLS 156
+E +E YD DF T+ G+ ++ ++ + +KND+S
Sbjct: 237 HEGYESYDVDFLTQDGVSVLGDAVDLVI--LWHKNDIS 272
>05_04_0096 -
17931061-17931435,17931539-17931620,17932319-17932446,
17932523-17932621,17932739-17932894,17934120-17934194,
17934582-17934749,17934825-17934993,17936640-17936923
Length = 511
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -2
Query: 296 LPKHDIGENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDL 159
L +DI NNE + YD FE S G + + Q + ++D+
Sbjct: 300 LTPYDICFNNETWNYYDQGFEKMISGVYLGEIARLVFQKMAEESDI 345
>03_05_0190 -
21770610-21770641,21770741-21770811,21771058-21771168,
21771249-21771500,21771584-21772086,21772188-21773234,
21773361-21773768,21773814-21773956,21774020-21774053
Length = 866
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 269 NEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLS 156
++ FE YD DF T G+ ++ ++ + +KND+S
Sbjct: 445 HDGFESYDIDFSTADGVSVLGDAVDLVI--LWHKNDIS 480
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 161 GRFYFQCTALFLPTCFRCH 217
GRF A++ P CFRCH
Sbjct: 568 GRFLSCMGAVWHPECFRCH 586
>09_01_0099 + 1493177-1493453,1494961-1495175,1495490-1496074
Length = 358
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -2
Query: 251 YDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPERLCPNRN 114
YD+D + T+ D M + + N++ I N+D + PN N
Sbjct: 274 YDSDVDDATTVGDDRVMQLLRRVVVVSVNEMLILNIDAHNIHPNDN 319
>05_03_0277 - 11509279-11510118,11514100-11514558
Length = 432
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 245 RHNLRNLHYFHRYRVS 292
RHN+R+LH F R++ S
Sbjct: 41 RHNVRSLHVFRRHKNS 56
>04_04_0229 - 23766488-23766946,23767901-23768128
Length = 228
Score = 25.4 bits (53), Expect = 9.4
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +2
Query: 92 KI*SYLRRFYLDTDVPGLN*VYLGRFYFQCTALFLPTCFRCHLRLFLSQSQRHNLRNL 265
K+ SYL+R L+ D G N + + T L + CFR ++L+ S R R L
Sbjct: 112 KVCSYLKREQLEPDTEGFNVLLKALLDAEFTQLTM-DCFRL-MKLWDSDPDRITYRTL 167
>03_02_0901 +
12267042-12267182,12267949-12268095,12268163-12268253,
12268367-12268485,12268779-12268969,12269440-12269650,
12270072-12270309,12270944-12271329,12271933-12271956,
12271984-12272077,12272341-12272525,12273025-12273255,
12273665-12273730,12273816-12274034,12274764-12275003,
12275244-12275423,12276269-12276535,12276612-12276815,
12276896-12277048
Length = 1128
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 305 KNNLPKHDIGENNEDFEDYDADFETKTSADDSGN 204
K L +I EN+ D E+ D DFE + ++ N
Sbjct: 657 KAALRGQEINENDVDDEEVDGDFEDLETGEEVDN 690
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,079,025
Number of Sequences: 37544
Number of extensions: 128096
Number of successful extensions: 367
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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