Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13k02
(315 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC016162-1|AAH16162.1| 314|Homo sapiens PPP1R9B protein protein. 32 0.41
AJ401189-1|CAC37685.1| 817|Homo sapiens neurabin II protein pro... 32 0.41
U59919-1|AAC50788.1| 792|Homo sapiens SMAP protein. 30 1.2
BC028679-1|AAH28679.1| 792|Homo sapiens kinesin-associated prot... 30 1.2
AL356475-3|CAH72581.1| 748|Homo sapiens kinesin-associated prot... 30 1.2
AL356475-2|CAH72582.1| 792|Homo sapiens kinesin-associated prot... 30 1.2
AL356475-1|CAH72580.1| 752|Homo sapiens kinesin-associated prot... 30 1.2
AL121714-3|CAI19741.1| 748|Homo sapiens kinesin-associated prot... 30 1.2
AL121714-2|CAI19740.1| 792|Homo sapiens kinesin-associated prot... 30 1.2
AL121714-1|CAI19739.1| 752|Homo sapiens kinesin-associated prot... 30 1.2
BX005110-1|CAI17266.1| 243|Homo sapiens chromosome 1 open readi... 28 6.6
AL691523-1|CAI17365.1| 243|Homo sapiens chromosome 1 open readi... 28 6.6
BC067302-1|AAH67302.1| 243|Homo sapiens chromosome 1 open readi... 27 8.8
BC035643-1|AAH35643.1| 266|Homo sapiens C1orf174 protein protein. 27 8.8
BC014491-1|AAH14491.2| 1066|Homo sapiens WD repeat domain 60 pro... 27 8.8
AF090925-1|AAF24040.1| 34|Homo sapiens PRO0452 protein. 27 8.8
>BC016162-1|AAH16162.1| 314|Homo sapiens PPP1R9B protein protein.
Length = 314
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -2
Query: 278 GENNEDFEDYDADFETKTSAD-DSGNMLEEIMQCIENKNDLSIPNLDPERL 129
GE++E+ +Y D + + S G M E+ + EN++ LS +++PE+L
Sbjct: 114 GEDDEETGEYATDEDEELSPTFPGGEMAIEVFELAENEDALSPVDMEPEKL 164
>AJ401189-1|CAC37685.1| 817|Homo sapiens neurabin II protein
protein.
Length = 817
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = -2
Query: 278 GENNEDFEDYDADFETKTSAD-DSGNMLEEIMQCIENKNDLSIPNLDPERL 129
GE++E+ +Y D + + S G M E+ + EN++ LS +++PE+L
Sbjct: 617 GEDDEETGEYATDEDEELSPTFPGGEMAIEVFELAENEDALSPVDMEPEKL 667
>U59919-1|AAC50788.1| 792|Homo sapiens SMAP protein.
Length = 792
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -2
Query: 299 NLPKHDIGENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPE 135
N+ +HD G F DY D + S D+ E +++C+ +L+IP+LD E
Sbjct: 489 NISQHD-GPTKNLFIDYVGDLAAQISNDEEE---EFVIECLGTLANLTIPDLDWE 539
>BC028679-1|AAH28679.1| 792|Homo sapiens kinesin-associated protein
3 protein.
Length = 792
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -2
Query: 299 NLPKHDIGENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPE 135
N+ +HD G F DY D + S D+ E +++C+ +L+IP+LD E
Sbjct: 489 NISQHD-GPTKNLFIDYVGDLAAQISNDEEE---EFVIECLGTLANLTIPDLDWE 539
>AL356475-3|CAH72581.1| 748|Homo sapiens kinesin-associated protein
3 protein.
Length = 748
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -2
Query: 299 NLPKHDIGENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPE 135
N+ +HD G F DY D + S D+ E +++C+ +L+IP+LD E
Sbjct: 445 NISQHD-GPTKNLFIDYVGDLAAQISNDEEE---EFVIECLGTLANLTIPDLDWE 495
>AL356475-2|CAH72582.1| 792|Homo sapiens kinesin-associated protein
3 protein.
Length = 792
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -2
Query: 299 NLPKHDIGENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPE 135
N+ +HD G F DY D + S D+ E +++C+ +L+IP+LD E
Sbjct: 489 NISQHD-GPTKNLFIDYVGDLAAQISNDEEE---EFVIECLGTLANLTIPDLDWE 539
>AL356475-1|CAH72580.1| 752|Homo sapiens kinesin-associated protein
3 protein.
Length = 752
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -2
Query: 299 NLPKHDIGENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPE 135
N+ +HD G F DY D + S D+ E +++C+ +L+IP+LD E
Sbjct: 449 NISQHD-GPTKNLFIDYVGDLAAQISNDEEE---EFVIECLGTLANLTIPDLDWE 499
>AL121714-3|CAI19741.1| 748|Homo sapiens kinesin-associated protein
3 protein.
Length = 748
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -2
Query: 299 NLPKHDIGENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPE 135
N+ +HD G F DY D + S D+ E +++C+ +L+IP+LD E
Sbjct: 445 NISQHD-GPTKNLFIDYVGDLAAQISNDEEE---EFVIECLGTLANLTIPDLDWE 495
>AL121714-2|CAI19740.1| 792|Homo sapiens kinesin-associated protein
3 protein.
Length = 792
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -2
Query: 299 NLPKHDIGENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPE 135
N+ +HD G F DY D + S D+ E +++C+ +L+IP+LD E
Sbjct: 489 NISQHD-GPTKNLFIDYVGDLAAQISNDEEE---EFVIECLGTLANLTIPDLDWE 539
>AL121714-1|CAI19739.1| 752|Homo sapiens kinesin-associated protein
3 protein.
Length = 752
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -2
Query: 299 NLPKHDIGENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPE 135
N+ +HD G F DY D + S D+ E +++C+ +L+IP+LD E
Sbjct: 449 NISQHD-GPTKNLFIDYVGDLAAQISNDEEE---EFVIECLGTLANLTIPDLDWE 499
>BX005110-1|CAI17266.1| 243|Homo sapiens chromosome 1 open reading
frame 174 protein.
Length = 243
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = -2
Query: 236 ETKTSAD---DSGNMLEEIMQCIENKND-LSIPNLDPERLCPNRNGE 108
+T+TS D G++++ +Q + KND S+P + PE C N E
Sbjct: 52 DTRTSKKFKCDKGHLVKSELQKLVPKNDSASLPKVTPETPCENEFAE 98
>AL691523-1|CAI17365.1| 243|Homo sapiens chromosome 1 open reading
frame 174 protein.
Length = 243
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = -2
Query: 236 ETKTSAD---DSGNMLEEIMQCIENKND-LSIPNLDPERLCPNRNGE 108
+T+TS D G++++ +Q + KND S+P + PE C N E
Sbjct: 52 DTRTSKKFKCDKGHLVKSELQKLVPKNDSASLPKVTPETPCENEFAE 98
>BC067302-1|AAH67302.1| 243|Homo sapiens chromosome 1 open reading
frame 174 protein.
Length = 243
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 215 DSGNMLEEIMQCIENKND-LSIPNLDPERLCPNRNGE 108
D G++++ +Q + KND S+P + PE C N E
Sbjct: 62 DKGHLVKSELQKLVPKNDSASLPKVTPETPCENEFAE 98
>BC035643-1|AAH35643.1| 266|Homo sapiens C1orf174 protein protein.
Length = 266
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 215 DSGNMLEEIMQCIENKND-LSIPNLDPERLCPNRNGE 108
D G++++ +Q + KND S+P + PE C N E
Sbjct: 85 DKGHLVKSELQKLVPKNDSASLPKVTPETPCENEFAE 121
>BC014491-1|AAH14491.2| 1066|Homo sapiens WD repeat domain 60
protein.
Length = 1066
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 266 EDFEDYDADFETKTSADDSGNMLEEIMQCIE 174
+DFEDY+ DFE DD + E + +E
Sbjct: 376 DDFEDYEDDFEVCDGDDDESSNEPESREKLE 406
>AF090925-1|AAF24040.1| 34|Homo sapiens PRO0452 protein.
Length = 34
Score = 27.5 bits (58), Expect = 8.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 170 YFQCTALFLPTCFRCH 217
YF+CT FL CF C+
Sbjct: 15 YFECTEAFLLACFSCN 30
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,790,466
Number of Sequences: 237096
Number of extensions: 719216
Number of successful extensions: 1604
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1604
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1453211950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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