Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13k02
(315 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT003203-1|AAO24958.1| 1051|Drosophila melanogaster RE36115p pro... 29 0.95
AF411457-1|AAL32442.1| 1900|Drosophila melanogaster rolling pebb... 29 0.95
AF386647-1|AAL50557.1| 1900|Drosophila melanogaster rolling pebb... 29 0.95
AE014296-2082|AAF49967.2| 1900|Drosophila melanogaster CG32096-P... 29 0.95
AE013599-2224|AAF58038.1| 1051|Drosophila melanogaster CG15701-P... 29 0.95
AE014296-2489|AAF49656.2| 1190|Drosophila melanogaster CG7003-PA... 29 1.3
BT029949-1|ABM92823.1| 310|Drosophila melanogaster IP17161p pro... 28 2.2
BT029942-1|ABM92816.1| 310|Drosophila melanogaster IP16861p pro... 28 2.2
BT021271-1|AAX33419.1| 842|Drosophila melanogaster RE46655p pro... 28 2.2
AE014134-2788|AAF53573.1| 842|Drosophila melanogaster CG13272-P... 28 2.2
AY051928-1|AAK93352.1| 501|Drosophila melanogaster LD41209p pro... 28 2.9
AJ318090-1|CAC41645.1| 672|Drosophila melanogaster nuclear RNA ... 28 2.9
AJ251947-1|CAB64382.2| 672|Drosophila melanogaster tip associat... 28 2.9
AE014298-1507|AAF47959.3| 672|Drosophila melanogaster CG1664-PA... 28 2.9
AE014296-2490|AAF49655.1| 501|Drosophila melanogaster CG6876-PA... 28 2.9
BT023021-1|AAY55437.1| 133|Drosophila melanogaster IP04071p pro... 27 3.8
AY071409-1|AAL49031.1| 306|Drosophila melanogaster RE49431p pro... 27 3.8
AM294630-1|CAL26628.1| 143|Drosophila melanogaster CG13934 prot... 27 3.8
AM294622-1|CAL26620.1| 143|Drosophila melanogaster CG13934 prot... 27 3.8
AE014296-3282|AAF49065.1| 306|Drosophila melanogaster CG7328-PA... 27 3.8
AY070572-1|AAL48043.1| 493|Drosophila melanogaster RE11719p pro... 27 5.0
AM294629-1|CAL26627.1| 143|Drosophila melanogaster CG13934 prot... 27 5.0
AM294628-1|CAL26626.1| 143|Drosophila melanogaster CG13934 prot... 27 5.0
AM294627-1|CAL26625.1| 143|Drosophila melanogaster CG13934 prot... 27 5.0
AM294626-1|CAL26624.1| 143|Drosophila melanogaster CG13934 prot... 27 5.0
AM294624-1|CAL26622.1| 143|Drosophila melanogaster CG13934 prot... 27 5.0
AM294623-1|CAL26621.1| 143|Drosophila melanogaster CG13934 prot... 27 5.0
AM294621-1|CAL26619.1| 143|Drosophila melanogaster CG13934 prot... 27 5.0
AE014298-572|AAF45903.1| 493|Drosophila melanogaster CG15239-PA... 27 5.0
AE014297-3316|AAF56126.3| 2236|Drosophila melanogaster CG6768-PA... 27 5.0
AE014296-369|AAF47578.1| 143|Drosophila melanogaster CG13934-PA... 27 5.0
AB035512-1|BAB17608.1| 2220|Drosophila melanogaster DNA polymera... 27 5.0
X17558-1|CAA35591.1| 1299|Drosophila melanogaster patched protei... 27 6.7
M28999-1|AAA28696.1| 1286|Drosophila melanogaster patched protein. 27 6.7
AY051748-1|AAK93172.1| 662|Drosophila melanogaster LD27655p pro... 27 6.7
AE013599-680|AAF59062.1| 1286|Drosophila melanogaster CG2411-PA ... 27 6.7
AE013599-75|AAM68379.1| 662|Drosophila melanogaster CG10417-PB,... 27 6.7
AE013599-74|AAF57333.1| 662|Drosophila melanogaster CG10417-PA,... 27 6.7
>BT003203-1|AAO24958.1| 1051|Drosophila melanogaster RE36115p
protein.
Length = 1051
Score = 29.5 bits (63), Expect = 0.95
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 293 PKHDIGENNEDFEDYDADFETKTSADD 213
P+ + ++DFE Y++DFET S D
Sbjct: 239 PEPESDHYSDDFESYESDFETDASTPD 265
>AF411457-1|AAL32442.1| 1900|Drosophila melanogaster rolling pebbles
isoform 7 protein.
Length = 1900
Score = 29.5 bits (63), Expect = 0.95
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 266 EDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNL 144
E ++ D D E + DSGN+ E+ Q N+ND+ + ++
Sbjct: 122 EQLQEQDEDEEESSDLVDSGNVEEDFWQPSFNRNDIMMTSV 162
>AF386647-1|AAL50557.1| 1900|Drosophila melanogaster rolling pebbles
isoform 7 protein.
Length = 1900
Score = 29.5 bits (63), Expect = 0.95
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 266 EDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNL 144
E ++ D D E + DSGN+ E+ Q N+ND+ + ++
Sbjct: 122 EQLQEQDEDEEESSDLVDSGNVEEDFWQPSFNRNDIMMTSV 162
>AE014296-2082|AAF49967.2| 1900|Drosophila melanogaster CG32096-PB,
isoform B protein.
Length = 1900
Score = 29.5 bits (63), Expect = 0.95
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 266 EDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNL 144
E ++ D D E + DSGN+ E+ Q N+ND+ + ++
Sbjct: 122 EQLQEQDEDEEESSDLVDSGNVEEDFWQPSFNRNDIMMTSV 162
>AE013599-2224|AAF58038.1| 1051|Drosophila melanogaster CG15701-PA
protein.
Length = 1051
Score = 29.5 bits (63), Expect = 0.95
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 293 PKHDIGENNEDFEDYDADFETKTSADD 213
P+ + ++DFE Y++DFET S D
Sbjct: 239 PEPESDHYSDDFESYESDFETDASTPD 265
>AE014296-2489|AAF49656.2| 1190|Drosophila melanogaster CG7003-PA
protein.
Length = 1190
Score = 29.1 bits (62), Expect = 1.3
Identities = 11/59 (18%), Positives = 32/59 (54%)
Frame = -2
Query: 308 EKNNLPKHDIGENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPER 132
E ++ P+ ++ ++ +DF D +D+E + ++ + ++ND+S+ + P++
Sbjct: 94 ESDSEPEMEVTKSEDDFSDCASDYEPDENEASDDSVSSGAEEVSPSENDMSVDSPTPKK 152
>BT029949-1|ABM92823.1| 310|Drosophila melanogaster IP17161p
protein.
Length = 310
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 308 EKNNLPKHDIGENNEDFEDYDADFETKTSADDSGNMLEE 192
+ +N H+ ++N+D +D D D E T DD+ + EE
Sbjct: 53 DDDNKKDHEDEDDNDDGDDKDKDDEDATGEDDNEDDEEE 91
>BT029942-1|ABM92816.1| 310|Drosophila melanogaster IP16861p
protein.
Length = 310
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 308 EKNNLPKHDIGENNEDFEDYDADFETKTSADDSGNMLEE 192
+ +N H+ ++N+D +D D D E T DD+ + EE
Sbjct: 53 DDDNKKDHEDEDDNDDGDDKDKDDEDATGEDDNEDDEEE 91
>BT021271-1|AAX33419.1| 842|Drosophila melanogaster RE46655p
protein.
Length = 842
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -2
Query: 281 IGENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKND 162
I ++NE + D D E + A++ N+L+ I Q +++ +D
Sbjct: 779 IEDDNETVTENDEDEEEEEEAEEPNNLLKRIDQFVDDVDD 818
>AE014134-2788|AAF53573.1| 842|Drosophila melanogaster CG13272-PA
protein.
Length = 842
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -2
Query: 281 IGENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKND 162
I ++NE + D D E + A++ N+L+ I Q +++ +D
Sbjct: 779 IEDDNETVTENDEDEEEEEEAEEPNNLLKRIDQFVDDVDD 818
>AY051928-1|AAK93352.1| 501|Drosophila melanogaster LD41209p
protein.
Length = 501
Score = 27.9 bits (59), Expect = 2.9
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = -2
Query: 275 ENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPERLCPNRNGEDKII 96
+N+ + E+ D++ SA+D + E++ + N D+ + LC R+ E
Sbjct: 14 DNDNELEEEDSEM---ASAEDESLLAEKLAKPAPNLMDVDVTVQSVRELCKLRDSERLKN 70
Query: 95 FLNE*HHFILHQ--ASKLFFPV-NFPE*CFVLE 6
L + H+ Q A+++ V + PE C +++
Sbjct: 71 TLQQIEHYASRQRTAAEMLGSVESDPEYCLIVD 103
>AJ318090-1|CAC41645.1| 672|Drosophila melanogaster nuclear RNA
export factor 1 (NXF1) protein.
Length = 672
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 266 EDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPER 132
EDF+D+D + + + + + QC+ NK D+ + D R
Sbjct: 27 EDFDDFDVEDRQRRKDRNKRRVSFKPSQCLHNKKDIKLRPEDLRR 71
>AJ251947-1|CAB64382.2| 672|Drosophila melanogaster tip associating
protein protein.
Length = 672
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 266 EDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPER 132
EDF+D+D + + + + + QC+ NK D+ + D R
Sbjct: 27 EDFDDFDVEDRQRRKDRNKRRVSFKPSQCLHNKKDIKLRPEDLRR 71
>AE014298-1507|AAF47959.3| 672|Drosophila melanogaster CG1664-PA
protein.
Length = 672
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -2
Query: 266 EDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPER 132
EDF+D+D + + + + + QC+ NK D+ + D R
Sbjct: 27 EDFDDFDVEDRQRRKDRNKRRVSFKPSQCLHNKKDIKLRPEDLRR 71
>AE014296-2490|AAF49655.1| 501|Drosophila melanogaster CG6876-PA
protein.
Length = 501
Score = 27.9 bits (59), Expect = 2.9
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = -2
Query: 275 ENNEDFEDYDADFETKTSADDSGNMLEEIMQCIENKNDLSIPNLDPERLCPNRNGEDKII 96
+N+ + E+ D++ SA+D + E++ + N D+ + LC R+ E
Sbjct: 14 DNDNELEEEDSEM---ASAEDESLLAEKLAKPAPNLMDVDVTVQSVRELCKLRDSERLKN 70
Query: 95 FLNE*HHFILHQ--ASKLFFPV-NFPE*CFVLE 6
L + H+ Q A+++ V + PE C +++
Sbjct: 71 TLQQIEHYASRQRTAAEMLGSVESDPEYCLIVD 103
>BT023021-1|AAY55437.1| 133|Drosophila melanogaster IP04071p
protein.
Length = 133
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +2
Query: 179 CTALFLPTCFRCHLRLFLSQSQRHNLRNLHYFHRYRVS 292
C L + + R F + + H+ LHY H+Y +S
Sbjct: 12 CCILRIRSVVRLGTSSFTANGRNHDEERLHYSHQYHIS 49
>AY071409-1|AAL49031.1| 306|Drosophila melanogaster RE49431p
protein.
Length = 306
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 302 NNLPKHDIGENNEDFEDYDADFETKTSADDSG 207
++L K +IG N+ F D D F + A DSG
Sbjct: 75 DDLSKREIGTNDCPFTDRDPPFSSVILAQDSG 106
>AM294630-1|CAL26628.1| 143|Drosophila melanogaster CG13934
protein.
Length = 143
Score = 27.5 bits (58), Expect = 3.8
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +2
Query: 215 HLRLFLSQSQRHNLRNLHYFHRYRVS 292
H+ + + + H+ LHY H+Y +S
Sbjct: 34 HIEFYSNYGRNHDEERLHYSHQYHIS 59
>AM294622-1|CAL26620.1| 143|Drosophila melanogaster CG13934
protein.
Length = 143
Score = 27.5 bits (58), Expect = 3.8
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +2
Query: 215 HLRLFLSQSQRHNLRNLHYFHRYRVS 292
H+ + + + H+ LHY H+Y +S
Sbjct: 34 HIEFYSNYGRNHDEERLHYSHQYHIS 59
>AE014296-3282|AAF49065.1| 306|Drosophila melanogaster CG7328-PA
protein.
Length = 306
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 302 NNLPKHDIGENNEDFEDYDADFETKTSADDSG 207
++L K +IG N+ F D D F + A DSG
Sbjct: 75 DDLSKREIGTNDCPFTDRDPPFSSVILAQDSG 106
>AY070572-1|AAL48043.1| 493|Drosophila melanogaster RE11719p
protein.
Length = 493
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = -2
Query: 278 GENNEDFED-YDADFETKTSADD 213
G+++ED ED YD+D +T ADD
Sbjct: 296 GDDDEDEEDDYDSDNDTDADADD 318
>AM294629-1|CAL26627.1| 143|Drosophila melanogaster CG13934
protein.
Length = 143
Score = 27.1 bits (57), Expect = 5.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2
Query: 215 HLRLFLSQSQRHNLRNLHYFHRYRVS 292
H+ + + H+ LHY H+Y +S
Sbjct: 34 HIEFYSDYGRNHDEERLHYSHQYHIS 59
>AM294628-1|CAL26626.1| 143|Drosophila melanogaster CG13934
protein.
Length = 143
Score = 27.1 bits (57), Expect = 5.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2
Query: 215 HLRLFLSQSQRHNLRNLHYFHRYRVS 292
H+ + + H+ LHY H+Y +S
Sbjct: 34 HIEFYSDYGRNHDEERLHYSHQYHIS 59
>AM294627-1|CAL26625.1| 143|Drosophila melanogaster CG13934
protein.
Length = 143
Score = 27.1 bits (57), Expect = 5.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2
Query: 215 HLRLFLSQSQRHNLRNLHYFHRYRVS 292
H+ + + H+ LHY H+Y +S
Sbjct: 34 HIEFYSDYGRNHDEERLHYSHQYHIS 59
>AM294626-1|CAL26624.1| 143|Drosophila melanogaster CG13934
protein.
Length = 143
Score = 27.1 bits (57), Expect = 5.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2
Query: 215 HLRLFLSQSQRHNLRNLHYFHRYRVS 292
H+ + + H+ LHY H+Y +S
Sbjct: 34 HIEFYSDYGRNHDEERLHYSHQYHIS 59
>AM294624-1|CAL26622.1| 143|Drosophila melanogaster CG13934
protein.
Length = 143
Score = 27.1 bits (57), Expect = 5.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2
Query: 215 HLRLFLSQSQRHNLRNLHYFHRYRVS 292
H+ + + H+ LHY H+Y +S
Sbjct: 34 HIEFYSDYGRNHDEERLHYSHQYHIS 59
>AM294623-1|CAL26621.1| 143|Drosophila melanogaster CG13934
protein.
Length = 143
Score = 27.1 bits (57), Expect = 5.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2
Query: 215 HLRLFLSQSQRHNLRNLHYFHRYRVS 292
H+ + + H+ LHY H+Y +S
Sbjct: 34 HIEFYSDYGRNHDEERLHYSHQYHIS 59
>AM294621-1|CAL26619.1| 143|Drosophila melanogaster CG13934
protein.
Length = 143
Score = 27.1 bits (57), Expect = 5.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2
Query: 215 HLRLFLSQSQRHNLRNLHYFHRYRVS 292
H+ + + H+ LHY H+Y +S
Sbjct: 34 HIEFYSDYGRNHDEERLHYSHQYHIS 59
>AE014298-572|AAF45903.1| 493|Drosophila melanogaster CG15239-PA
protein.
Length = 493
Score = 27.1 bits (57), Expect = 5.0
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = -2
Query: 278 GENNEDFED-YDADFETKTSADD 213
G+++ED ED YD+D +T ADD
Sbjct: 296 GDDDEDEEDDYDSDNDTDADADD 318
>AE014297-3316|AAF56126.3| 2236|Drosophila melanogaster CG6768-PA
protein.
Length = 2236
Score = 27.1 bits (57), Expect = 5.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 308 EKNNLPKHDIGENNEDFEDYDADF 237
++NNLPK+DI + N F + D +
Sbjct: 915 KENNLPKYDIRDENSIFFEVDGPY 938
>AE014296-369|AAF47578.1| 143|Drosophila melanogaster CG13934-PA
protein.
Length = 143
Score = 27.1 bits (57), Expect = 5.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2
Query: 215 HLRLFLSQSQRHNLRNLHYFHRYRVS 292
H+ + + H+ LHY H+Y +S
Sbjct: 34 HIEFYSDYGRNHDEERLHYSHQYHIS 59
>AB035512-1|BAB17608.1| 2220|Drosophila melanogaster DNA polymerase
epsilon protein.
Length = 2220
Score = 27.1 bits (57), Expect = 5.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 308 EKNNLPKHDIGENNEDFEDYDADF 237
++NNLPK+DI + N F + D +
Sbjct: 915 KENNLPKYDIRDENSIFFEVDGPY 938
>X17558-1|CAA35591.1| 1299|Drosophila melanogaster patched protein
protein.
Length = 1299
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 104 YLRRFYLDTDVPGLN*VYLGRFYFQCTALFLPTCFRCHLRLFLSQSQRH 250
Y+R ++D V L+ + G+ TA++L + F+ HL S Q+H
Sbjct: 26 YIRTSWVDAQV-ALDQIDKGKARGSRTAIYLRSVFQSHLETLGSSVQKH 73
>M28999-1|AAA28696.1| 1286|Drosophila melanogaster patched protein.
Length = 1286
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 104 YLRRFYLDTDVPGLN*VYLGRFYFQCTALFLPTCFRCHLRLFLSQSQRH 250
Y+R ++D V L+ + G+ TA++L + F+ HL S Q+H
Sbjct: 26 YIRTSWVDAQV-ALDQIDKGKARGSRTAIYLRSVFQSHLETLGSSVQKH 73
>AY051748-1|AAK93172.1| 662|Drosophila melanogaster LD27655p
protein.
Length = 662
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -2
Query: 269 NEDFEDYDADFETKTSADDSGNMLEEIMQCIENKND 162
+++F D DAD+E + E C EN +D
Sbjct: 321 DDEFTDDDADYEENDNVKSPDTSSAESSDCTENDDD 356
>AE013599-680|AAF59062.1| 1286|Drosophila melanogaster CG2411-PA
protein.
Length = 1286
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 104 YLRRFYLDTDVPGLN*VYLGRFYFQCTALFLPTCFRCHLRLFLSQSQRH 250
Y+R ++D V L+ + G+ TA++L + F+ HL S Q+H
Sbjct: 26 YIRTSWVDAQV-ALDQIDKGKARGSRTAIYLRSVFQSHLETLGSSVQKH 73
>AE013599-75|AAM68379.1| 662|Drosophila melanogaster CG10417-PB,
isoform B protein.
Length = 662
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -2
Query: 269 NEDFEDYDADFETKTSADDSGNMLEEIMQCIENKND 162
+++F D DAD+E + E C EN +D
Sbjct: 321 DDEFTDDDADYEENDNVKSPDTSSAESSDCTENDDD 356
>AE013599-74|AAF57333.1| 662|Drosophila melanogaster CG10417-PA,
isoform A protein.
Length = 662
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -2
Query: 269 NEDFEDYDADFETKTSADDSGNMLEEIMQCIENKND 162
+++F D DAD+E + E C EN +D
Sbjct: 321 DDEFTDDDADYEENDNVKSPDTSSAESSDCTENDDD 356
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,458,025
Number of Sequences: 53049
Number of extensions: 236501
Number of successful extensions: 861
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 631882260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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