Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13k02
(315 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase pro... 23 0.87
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 21 3.5
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 21 3.5
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 21 3.5
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 21 3.5
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 21 3.5
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 21 3.5
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 21 3.5
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 21 3.5
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 21 3.5
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 21 3.5
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 21 4.7
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 4.7
AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor p... 20 6.2
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 20 6.2
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 20 6.2
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 20 8.1
>AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase
protein.
Length = 588
Score = 23.0 bits (47), Expect = 0.87
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -2
Query: 302 NNLPKHDIGENNEDFEDYDADFETKTSADD 213
N P D G + DF+D D F T +D
Sbjct: 73 NRSPMVDFGYDISDFKDVDPIFGTIKDLED 102
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 3.5
Identities = 8/40 (20%), Positives = 22/40 (55%)
Frame = -2
Query: 143 DPERLCPNRNGEDKIIFLNE*HHFILHQASKLFFPVNFPE 24
+P+ + N + + + N +++ H +KL++ +N+ E
Sbjct: 78 EPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIE 117
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 3.5
Identities = 8/40 (20%), Positives = 22/40 (55%)
Frame = -2
Query: 143 DPERLCPNRNGEDKIIFLNE*HHFILHQASKLFFPVNFPE 24
+P+ + N + + + N +++ H +KL++ +N+ E
Sbjct: 78 EPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIE 117
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 3.5
Identities = 8/40 (20%), Positives = 22/40 (55%)
Frame = -2
Query: 143 DPERLCPNRNGEDKIIFLNE*HHFILHQASKLFFPVNFPE 24
+P+ + N + + + N +++ H +KL++ +N+ E
Sbjct: 78 EPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIE 117
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 3.5
Identities = 8/40 (20%), Positives = 22/40 (55%)
Frame = -2
Query: 143 DPERLCPNRNGEDKIIFLNE*HHFILHQASKLFFPVNFPE 24
+P+ + N + + + N +++ H +KL++ +N+ E
Sbjct: 78 EPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIE 117
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 3.5
Identities = 8/40 (20%), Positives = 22/40 (55%)
Frame = -2
Query: 143 DPERLCPNRNGEDKIIFLNE*HHFILHQASKLFFPVNFPE 24
+P+ + N + + + N +++ H +KL++ +N+ E
Sbjct: 78 EPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIE 117
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 3.5
Identities = 8/40 (20%), Positives = 22/40 (55%)
Frame = -2
Query: 143 DPERLCPNRNGEDKIIFLNE*HHFILHQASKLFFPVNFPE 24
+P+ + N + + + N +++ H +KL++ +N+ E
Sbjct: 78 EPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIE 117
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 3.5
Identities = 8/40 (20%), Positives = 22/40 (55%)
Frame = -2
Query: 143 DPERLCPNRNGEDKIIFLNE*HHFILHQASKLFFPVNFPE 24
+P+ + N + + + N +++ H +KL++ +N+ E
Sbjct: 78 EPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIE 117
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.0 bits (42), Expect = 3.5
Identities = 8/40 (20%), Positives = 22/40 (55%)
Frame = -2
Query: 143 DPERLCPNRNGEDKIIFLNE*HHFILHQASKLFFPVNFPE 24
+P+ + N + + + N +++ H +KL++ +N+ E
Sbjct: 78 EPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIE 117
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 3.5
Identities = 8/40 (20%), Positives = 22/40 (55%)
Frame = -2
Query: 143 DPERLCPNRNGEDKIIFLNE*HHFILHQASKLFFPVNFPE 24
+P+ + N + + + N +++ H +KL++ +N+ E
Sbjct: 311 EPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIE 350
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 21.0 bits (42), Expect = 3.5
Identities = 8/40 (20%), Positives = 22/40 (55%)
Frame = -2
Query: 143 DPERLCPNRNGEDKIIFLNE*HHFILHQASKLFFPVNFPE 24
+P+ + N + + + N +++ H +KL++ +N+ E
Sbjct: 311 EPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINYIE 350
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 20.6 bits (41), Expect = 4.7
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -2
Query: 290 KHDIGENNEDFEDYD 246
K+ G++N D+ED D
Sbjct: 106 KNKDGDDNNDYEDND 120
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 20.6 bits (41), Expect = 4.7
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = -2
Query: 218 DDSGNMLEEIMQCIENKNDLSIPNLDPERLCPNRNGEDKI 99
D +M EE+ C N+ P + +R ED+I
Sbjct: 1683 DPRRHMYEELNHCAPNRRCPPPPRMGSAEGLSHRGMEDEI 1722
>AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor
protein.
Length = 139
Score = 20.2 bits (40), Expect = 6.2
Identities = 5/8 (62%), Positives = 7/8 (87%)
Frame = +3
Query: 210 AVICACFC 233
++IC CFC
Sbjct: 75 SIICKCFC 82
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 20.2 bits (40), Expect = 6.2
Identities = 5/8 (62%), Positives = 7/8 (87%)
Frame = +3
Query: 210 AVICACFC 233
++IC CFC
Sbjct: 523 SIICKCFC 530
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 20.2 bits (40), Expect = 6.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 242 QRHNLRNLHYFHRYRVSVNYSS 307
Q +L++LHY +S +YSS
Sbjct: 357 QTQSLQHLHYRQPPTLSESYSS 378
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 19.8 bits (39), Expect = 8.1
Identities = 8/40 (20%), Positives = 21/40 (52%)
Frame = -2
Query: 143 DPERLCPNRNGEDKIIFLNE*HHFILHQASKLFFPVNFPE 24
+P+ + N + + N +++ H +KL++ +N+ E
Sbjct: 78 EPKIISNNNPLSNNYNYNNNYNNYNKHNYNKLYYNINYIE 117
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,590
Number of Sequences: 438
Number of extensions: 1612
Number of successful extensions: 18
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 6719922
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
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