Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13j14
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    24   1.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.2  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    24   1.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   6.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.8  

>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 7   VLDPIMEDFNSAFKK 51
           + DPI+ED++  FKK
Sbjct: 64  LFDPIIEDYHGGFKK 78


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 416 GYDVCIFGCHTDCFLFILLCYKI 484
           GY  C+  C T+ +  I+L + +
Sbjct: 101 GYATCVLSCWTNIYYIIILAWAL 123



 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 665 ILPIFKYXGN*TCQPSC 715
           I PIFK  G  TC  SC
Sbjct: 93  IAPIFKGIGYATCVLSC 109


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +2

Query: 416 GYDVCIFGCHTDCFLFILLCYKI 484
           GY  C+  C T+ +  I+L + +
Sbjct: 154 GYATCVLSCWTNIYYIIILAWAL 176



 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 665 ILPIFKYXGN*TCQPSC 715
           I PIFK  G  TC  SC
Sbjct: 146 IAPIFKGIGYATCVLSC 162


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 7   VLDPIMEDFNSAFKK 51
           + DPI+ED++  FKK
Sbjct: 80  LFDPIIEDYHGGFKK 94


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 585 TVTQSAHSPILYSPFEYCNDTVCP 656
           T   + HSP+L +PF      +CP
Sbjct: 445 TTPTTPHSPLLVAPFG-AGRRICP 467


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 212 SYSLNFWILCCCDTSSDNNYV 274
           SYS N   LC CD  +   Y+
Sbjct: 662 SYSSNNKTLCKCDAQNCRRYL 682


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,268
Number of Sequences: 438
Number of extensions: 4150
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)