Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13j09
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    28   0.48 
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    27   0.83 
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    24   5.9  

>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.9 bits (59), Expect = 0.48
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 124 RIHKLLVKKYKRINYLYKKCYLLNTEKL 207
           R+  L+++K + IN+  ++C  L TEK+
Sbjct: 284 RLESLILEKQEEINFWKQRCRALETEKI 311


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 27.1 bits (57), Expect = 0.83
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 320 PIVENSQSEYPGKRYPDATWR 258
           PI+E+S ++YP    P A WR
Sbjct: 89  PIIESSMNKYPLNGRPQAFWR 109


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = +1

Query: 127  IHKLLVKKYKRINYLYK 177
            +H+++V+++KR N +YK
Sbjct: 1514 VHQVIVREFKRRNIVYK 1530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,254,073
Number of Sequences: 5004
Number of extensions: 20832
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)