Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13j07
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    28   1.1  
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    26   4.2  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.8  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    25   9.8  

>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 392 QISRQFSWHFDCALVTFNTAFASIYLGS*TPREKDKLR 505
           Q++R + WH D AL  +N    +  L    P+    LR
Sbjct: 175 QVTRFYRWHIDAALYDYNPPVVTTLLAVNAPQGTQTLR 212


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +1

Query: 211 KMLLYIF-EVYSYINSKSKRSQTILFKSIVRCVRLINSVALYVKLLS*QPKQINNMK 378
           ++ +Y+F E+Y   +  S  +  ++ +S+VR  +   +++LY K+++ +PK   + K
Sbjct: 265 QIAIYMFDEMYRTHHWSSFTACRLMIESLVRQNKFEEAISLYKKIIAKRPKIARDKK 321


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 497 KLRKVRASLKVTNAGKIALISFLCYLILQCDITHCLLHF 613
           KL    ASL      KI  +S++C+  L   I HC  +F
Sbjct: 127 KLSSAMASLHYLKFVKIIALSYICFSSL-IRICHCWTYF 164


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 660 WSPMALACLVLSPIRSK*SRQC 595
           WSP+A  CL+ +  RS   R C
Sbjct: 153 WSPIASHCLIATAYRSSSIRLC 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,539
Number of Sequences: 5004
Number of extensions: 44594
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)