Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13i13
         (688 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035645-1|AAH35645.1| 1266|Homo sapiens Similar to RIKEN cDNA 3...    32   2.2  
AY181243-1|AAO27355.1| 1178|Homo sapiens G protein-coupled recep...    32   2.2  
AB028986-1|BAA83015.1|  593|Homo sapiens KIAA1063 protein protein.     32   2.2  
AK098835-1|BAC05428.1|  182|Homo sapiens protein ( Homo sapiens ...    31   2.9  

>BC035645-1|AAH35645.1| 1266|Homo sapiens Similar to RIKEN cDNA
           3830613O22 gene protein.
          Length = 1266

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 472 LLSVIFFLDLVRLKIYSWQLSLEFVFKICFLFCLIWFGNFQ*TSNS 335
           ++S I+   L+R+ + SW + +   F I FL C+++ G    T N+
Sbjct: 778 IVSYIYHHSLIRISLKSWHMLVNLCFHI-FLTCVVFVGGITQTRNA 822


>AY181243-1|AAO27355.1| 1178|Homo sapiens G protein-coupled receptor
           125 protein.
          Length = 1178

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 472 LLSVIFFLDLVRLKIYSWQLSLEFVFKICFLFCLIWFGNFQ*TSNS 335
           ++S I+   L+R+ + SW + +   F I FL C+++ G    T N+
Sbjct: 635 IVSYIYHHSLIRISLKSWHMLVNLCFHI-FLTCVVFVGGITQTRNA 679


>AB028986-1|BAA83015.1|  593|Homo sapiens KIAA1063 protein protein.
          Length = 593

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 8/112 (7%)
 Frame = -1

Query: 433 KIYSWQLSLEFVFKICFLFCLIWFGNFQ*TSNSDKSCI------HLRIIN--LYNVFLQS 278
           K+ +W+ +L  +++     C +W G  +      KSCI      HL  ++  LY VF   
Sbjct: 98  KVDNWKQNLRAIYQ-----CFVWSGTAEARKRKAKSCICHVCGVHLNRLHSCLYCVFFGC 152

Query: 277 FLRKKYYRMHLA*P**KKHRQNLTFDLITNFCLW*FPNKEKLYEXKMSMVXK 122
           F  KK+   H      K  R NL  DL+    ++ F  ++ +Y+  M ++ K
Sbjct: 153 F-TKKHIHEHA-----KAKRHNLAIDLMYG-GIYCFLCQDYIYDKDMEIIAK 197


>AK098835-1|BAC05428.1|  182|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25969 fis, clone CBR02250. ).
          Length = 182

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 484 AFIYLLSVIFFLDLVRLKIYSWQLSLEFVFKICFLFCLIWF 362
           +F+Y  S+   L L  L   S  L+L F   + F FC ++F
Sbjct: 16  SFLYHESIFLLLFLFFLSFLSLSLALSFFLSLSFFFCFLFF 56


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,202,280
Number of Sequences: 237096
Number of extensions: 1688050
Number of successful extensions: 1833
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1833
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)