Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13i11
         (435 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   2.0  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   3.4  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   6.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   6.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   6.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   6.0  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   6.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.9  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   7.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   7.9  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 279 NVLNSLCNFFEMKFHIIKCRFGINQNLYGINNNPKIVLIQFIGKF 413
           NV   +C+ + ++F  +  ++GI QN        +I ++   G F
Sbjct: 48  NVPTFMCHKYGLRFEEVSEKYGILQNWMDKFRGEEIAILYDPGMF 92


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 59  NTLYFNTIYSNSXNHQAYY 3
           ++L  NTI++N+ N + YY
Sbjct: 316 SSLSNNTIHNNNYNKKLYY 334


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 104 N*KYKSHIYSYNSTRNTLYFNTIY 33
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 104 N*KYKSHIYSYNSTRNTLYFNTIY 33
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 104 N*KYKSHIYSYNSTRNTLYFNTIY 33
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 104 N*KYKSHIYSYNSTRNTLYFNTIY 33
           N KY  +  +YN+    LY+N  Y
Sbjct: 95  NYKYNYNNNNYNNNCKKLYYNINY 118


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 89  SHIYSYNSTRNTLYFNTIYSNSXNHQAYY 3
           S+ Y Y++  N   +N    N+ N + YY
Sbjct: 319 SNNYKYSNYNNYNNYNNNNYNNYNKKLYY 347


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 26  NYYKWY*NIGCSLWNYMNKYV 88
           NY  WY N   +L N +N ++
Sbjct: 204 NYSGWYLNHDYNLENKLNYFI 224


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 80  YSYNSTRNTLYFNTIY 33
           Y+YN+    LY+N  Y
Sbjct: 98  YNYNNNCKKLYYNINY 113


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 98  KYKSHIYSYNSTRNTLYFNTIYSNSXNH 15
           +Y+S+      TRN+  F+++ S++  H
Sbjct: 700 EYRSNSMGAVMTRNSEMFSSLLSDTEQH 727


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,494
Number of Sequences: 438
Number of extensions: 1417
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)