Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13h13
         (306 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB014567-1|BAA31642.1| 1111|Homo sapiens KIAA0667 protein protein.     28   4.6  
BX537919-1|CAD97902.1|  621|Homo sapiens hypothetical protein pr...    28   6.1  
BC131733-1|AAI31734.1| 1509|Homo sapiens ADAMTS12 protein protein.     27   8.1  
BC018905-1|AAH18905.1|  447|Homo sapiens F-box protein 5 protein.      27   8.1  
AY079515-1|AAL86610.1|  447|Homo sapiens early mitotic inhibitor...    27   8.1  
AL080276-3|CAI18895.1|  447|Homo sapiens F-box protein 5 protein.      27   8.1  
AJ250725-1|CAC20419.1| 1593|Homo sapiens a disintegrin-like and ...    27   8.1  
AF129535-1|AAF04469.1|  447|Homo sapiens F-box protein Fbx5 prot...    27   8.1  

>AB014567-1|BAA31642.1| 1111|Homo sapiens KIAA0667 protein protein.
          Length = 1111

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 148 HCSFSPVVLREFNGRKHYIKVD 83
           HC+ +PV++R F  R+  +K D
Sbjct: 273 HCTLAPVLIRRFKEREENVKAD 294


>BX537919-1|CAD97902.1|  621|Homo sapiens hypothetical protein
           protein.
          Length = 621

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 105 RPLNSRNTTGLKLQCFPPLFPMR*SRAEVPRLGSKTLPCKE 227
           +P+NS+  TG   Q  PP+   R      P   SKT+   E
Sbjct: 121 KPINSKAVTGQTTQVSPPVIAGRVLSQSTPGTPSKTITISE 161


>BC131733-1|AAI31734.1| 1509|Homo sapiens ADAMTS12 protein protein.
          Length = 1509

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 173  LKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNP 271
            LKP++G     KNPP  +  PP     R +  P
Sbjct: 918  LKPNKGTISNGKNPPTLKPVPPPTSRPRMLTTP 950


>BC018905-1|AAH18905.1|  447|Homo sapiens F-box protein 5 protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 82  CRRHDSTNSISLSKTDNCCSSIHSGLK 2
           C+   ST S+ + K D  C+ +HSGLK
Sbjct: 36  CKEESSTLSVKM-KCDFNCNHVHSGLK 61


>AY079515-1|AAL86610.1|  447|Homo sapiens early mitotic inhibitor
           protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 82  CRRHDSTNSISLSKTDNCCSSIHSGLK 2
           C+   ST S+ + K D  C+ +HSGLK
Sbjct: 36  CKEESSTLSVKM-KCDFNCNHVHSGLK 61


>AL080276-3|CAI18895.1|  447|Homo sapiens F-box protein 5 protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 82  CRRHDSTNSISLSKTDNCCSSIHSGLK 2
           C+   ST S+ + K D  C+ +HSGLK
Sbjct: 36  CKEESSTLSVKM-KCDFNCNHVHSGLK 61


>AJ250725-1|CAC20419.1| 1593|Homo sapiens a disintegrin-like and
            metalloprotease (reprolysin type) with thrombospondin ty
            protein.
          Length = 1593

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 173  LKPSRGATIGIKNPPMQRTAPPTMLTIRAVKNP 271
            LKP++G     KNPP  +  PP     R +  P
Sbjct: 1002 LKPNKGTISNGKNPPTLKPVPPPTSRPRMLTTP 1034


>AF129535-1|AAF04469.1|  447|Homo sapiens F-box protein Fbx5
           protein.
          Length = 447

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 82  CRRHDSTNSISLSKTDNCCSSIHSGLK 2
           C+   ST S+ + K D  C+ +HSGLK
Sbjct: 36  CKEESSTLSVKM-KCDFNCNHVHSGLK 61


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,827,921
Number of Sequences: 237096
Number of extensions: 966792
Number of successful extensions: 1679
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1678
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1342408202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)