Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13g24
         (604 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035556-1|AAH35556.1|  538|Homo sapiens dolichol kinase protein.      93   9e-19
AY358759-1|AAQ89119.1|  538|Homo sapiens TREC2422 protein.             93   9e-19
AL672142-9|CAI10844.1|  538|Homo sapiens dolichol kinase protein.      93   9e-19
AB029017-1|BAA83046.2|  544|Homo sapiens KIAA1094 protein protein.     93   9e-19
U76254-1|AAD00248.1|  381|Homo sapiens neuropeptide Y receptor t...    29   9.5  

>BC035556-1|AAH35556.1|  538|Homo sapiens dolichol kinase protein.
          Length = 538

 Score = 92.7 bits (220), Expect = 9e-19
 Identities = 54/148 (36%), Positives = 89/148 (60%), Gaps = 9/148 (6%)
 Frame = -2

Query: 603 LQSAFDVYSDEKDIGSFAMTPIYLYVGLACPLILVP---SYEGT-----TLELLSGVLAT 448
           L+S   ++ DE+D G   +T IYL +G++ P+ L+P   + +G+      L   +GVLA 
Sbjct: 388 LRSFLSLFLDERDSGPLILTHIYLLLGMSLPIWLIPRPCTQKGSLGGARALVPYAGVLAV 447

Query: 447 GVGDTAASWFGSKYGTKKWTNSEKTVEGTIANVLSQVATVYVLHLFGL-LRNNTVLIRTM 271
           GVGDT AS FGS  G  +W  ++KT EGT+ ++ +Q+ +V ++ +F   +  N      +
Sbjct: 448 GVGDTVASIFGSTMGEIRWPGTKKTFEGTMTSIFAQIISVALILIFDSGVDLNYSYAWIL 507

Query: 270 LAASISSVVEAKTDQVDNLILPLVTLLV 187
            + S  S++EA T Q+DNL+LPL  L++
Sbjct: 508 GSISTVSLLEAYTTQIDNLLLPLYLLIL 535


>AY358759-1|AAQ89119.1|  538|Homo sapiens TREC2422 protein.
          Length = 538

 Score = 92.7 bits (220), Expect = 9e-19
 Identities = 54/148 (36%), Positives = 89/148 (60%), Gaps = 9/148 (6%)
 Frame = -2

Query: 603 LQSAFDVYSDEKDIGSFAMTPIYLYVGLACPLILVP---SYEGT-----TLELLSGVLAT 448
           L+S   ++ DE+D G   +T IYL +G++ P+ L+P   + +G+      L   +GVLA 
Sbjct: 388 LRSFLSLFLDERDSGPLILTHIYLLLGMSLPIWLIPRPCTQKGSLGGARALVPYAGVLAV 447

Query: 447 GVGDTAASWFGSKYGTKKWTNSEKTVEGTIANVLSQVATVYVLHLFGL-LRNNTVLIRTM 271
           GVGDT AS FGS  G  +W  ++KT EGT+ ++ +Q+ +V ++ +F   +  N      +
Sbjct: 448 GVGDTVASIFGSTMGEIRWPGTKKTFEGTMTSIFAQIISVALILIFDSGVDLNYSYAWIL 507

Query: 270 LAASISSVVEAKTDQVDNLILPLVTLLV 187
            + S  S++EA T Q+DNL+LPL  L++
Sbjct: 508 GSISTVSLLEAYTTQIDNLLLPLYLLIL 535


>AL672142-9|CAI10844.1|  538|Homo sapiens dolichol kinase protein.
          Length = 538

 Score = 92.7 bits (220), Expect = 9e-19
 Identities = 54/148 (36%), Positives = 89/148 (60%), Gaps = 9/148 (6%)
 Frame = -2

Query: 603 LQSAFDVYSDEKDIGSFAMTPIYLYVGLACPLILVP---SYEGT-----TLELLSGVLAT 448
           L+S   ++ DE+D G   +T IYL +G++ P+ L+P   + +G+      L   +GVLA 
Sbjct: 388 LRSFLSLFLDERDSGPLILTHIYLLLGMSLPIWLIPRPCTQKGSLGGARALVPYAGVLAV 447

Query: 447 GVGDTAASWFGSKYGTKKWTNSEKTVEGTIANVLSQVATVYVLHLFGL-LRNNTVLIRTM 271
           GVGDT AS FGS  G  +W  ++KT EGT+ ++ +Q+ +V ++ +F   +  N      +
Sbjct: 448 GVGDTVASIFGSTMGEIRWPGTKKTFEGTMTSIFAQIISVALILIFDSGVDLNYSYAWIL 507

Query: 270 LAASISSVVEAKTDQVDNLILPLVTLLV 187
            + S  S++EA T Q+DNL+LPL  L++
Sbjct: 508 GSISTVSLLEAYTTQIDNLLLPLYLLIL 535


>AB029017-1|BAA83046.2|  544|Homo sapiens KIAA1094 protein protein.
          Length = 544

 Score = 92.7 bits (220), Expect = 9e-19
 Identities = 54/148 (36%), Positives = 89/148 (60%), Gaps = 9/148 (6%)
 Frame = -2

Query: 603 LQSAFDVYSDEKDIGSFAMTPIYLYVGLACPLILVP---SYEGT-----TLELLSGVLAT 448
           L+S   ++ DE+D G   +T IYL +G++ P+ L+P   + +G+      L   +GVLA 
Sbjct: 394 LRSFLSLFLDERDSGPLILTHIYLLLGMSLPIWLIPRPCTQKGSLGGARALVPYAGVLAV 453

Query: 447 GVGDTAASWFGSKYGTKKWTNSEKTVEGTIANVLSQVATVYVLHLFGL-LRNNTVLIRTM 271
           GVGDT AS FGS  G  +W  ++KT EGT+ ++ +Q+ +V ++ +F   +  N      +
Sbjct: 454 GVGDTVASIFGSTMGEIRWPGTKKTFEGTMTSIFAQIISVALILIFDSGVDLNYSYAWIL 513

Query: 270 LAASISSVVEAKTDQVDNLILPLVTLLV 187
            + S  S++EA T Q+DNL+LPL  L++
Sbjct: 514 GSISTVSLLEAYTTQIDNLLLPLYLLIL 541


>U76254-1|AAD00248.1|  381|Homo sapiens neuropeptide Y receptor type
           2 protein.
          Length = 381

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = -2

Query: 402 TKKWTNSEKTVEGTIANVLSQVATVYVLHLFGLLRNNTVLIRTMLAASIS 253
           T+KW   EK++ GT+ + LS +  +YVL L G++  +   I + L + +S
Sbjct: 204 TEKWPGEEKSIYGTVYS-LSSLLILYVLPL-GIISFSYTRIWSKLKSHVS 251


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,441,023
Number of Sequences: 237096
Number of extensions: 1731323
Number of successful extensions: 3307
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3299
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)