Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13g20
(634 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein. 27 0.15
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 25 0.61
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 25 0.61
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 25 0.61
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 25 0.61
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 25 0.61
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 25 0.61
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 25 0.61
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 25 0.61
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 25 0.61
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 25 0.61
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 25 0.61
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 23 2.5
AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex det... 23 2.5
AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective... 23 2.5
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 22 5.7
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 21 9.9
AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter... 21 9.9
>AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein.
Length = 200
Score = 27.1 bits (57), Expect = 0.15
Identities = 17/28 (60%), Positives = 18/28 (64%)
Frame = +2
Query: 476 NPPEPTGSYSKGIHSWSTGSSARTSPAA 559
N P PTGS + HS GSSA TSPAA
Sbjct: 60 NSPSPTGSSPQ--HS---GSSASTSPAA 82
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.0 bits (52), Expect = 0.61
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 542 ELRSLLTKNEFLWNKIQLVLAGSCRNAEDEERVRHLKDLAKHLSLENNVQFEVN 381
E L KN+ + K + RN + ER + K ++ + SL NN + N
Sbjct: 44 EREQKLYKNKREYRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNN 97
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 25.0 bits (52), Expect = 0.61
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 542 ELRSLLTKNEFLWNKIQLVLAGSCRNAEDEERVRHLKDLAKHLSLENNVQFEVN 381
E L KN+ + K + RN + ER + K ++ + SL NN + N
Sbjct: 44 EREQKLYKNKREYRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNN 97
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 25.0 bits (52), Expect = 0.61
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 542 ELRSLLTKNEFLWNKIQLVLAGSCRNAEDEERVRHLKDLAKHLSLENNVQFEVN 381
E L KN+ + K + RN + ER + K ++ + SL NN + N
Sbjct: 44 EREQKLYKNKREYRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNN 97
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 25.0 bits (52), Expect = 0.61
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 542 ELRSLLTKNEFLWNKIQLVLAGSCRNAEDEERVRHLKDLAKHLSLENNVQFEVN 381
E L KN+ + K + RN + ER + K ++ + SL NN + N
Sbjct: 44 EREQKLYKNKREYRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNN 97
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 25.0 bits (52), Expect = 0.61
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 542 ELRSLLTKNEFLWNKIQLVLAGSCRNAEDEERVRHLKDLAKHLSLENNVQFEVN 381
E L KN+ + K + RN + ER + K ++ + SL NN + N
Sbjct: 44 EREQKLYKNKREYRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNN 97
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 25.0 bits (52), Expect = 0.61
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 542 ELRSLLTKNEFLWNKIQLVLAGSCRNAEDEERVRHLKDLAKHLSLENNVQFEVN 381
E L KN+ + K + RN + ER + K ++ + SL NN + N
Sbjct: 44 EREQKLYKNKREYRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNN 97
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 25.0 bits (52), Expect = 0.61
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 542 ELRSLLTKNEFLWNKIQLVLAGSCRNAEDEERVRHLKDLAKHLSLENNVQFEVN 381
E L KN+ + K + RN + ER + K ++ + SL NN + N
Sbjct: 44 EREQKLYKNKREYRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNN 97
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 25.0 bits (52), Expect = 0.61
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 542 ELRSLLTKNEFLWNKIQLVLAGSCRNAEDEERVRHLKDLAKHLSLENNVQFEVN 381
E L KN+ + K + RN + ER + K ++ + SL NN + N
Sbjct: 44 EREQKLYKNKREYRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNN 97
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 25.0 bits (52), Expect = 0.61
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 542 ELRSLLTKNEFLWNKIQLVLAGSCRNAEDEERVRHLKDLAKHLSLENNVQFEVN 381
E L KN+ + K + RN + ER + K ++ + SL NN + N
Sbjct: 44 EREQKLYKNKREYRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNN 97
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 25.0 bits (52), Expect = 0.61
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 542 ELRSLLTKNEFLWNKIQLVLAGSCRNAEDEERVRHLKDLAKHLSLENNVQFEVN 381
E L KN+ + K + RN + ER + K ++ + SL NN + N
Sbjct: 277 EREQKLYKNKREYRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNN 330
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 25.0 bits (52), Expect = 0.61
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 542 ELRSLLTKNEFLWNKIQLVLAGSCRNAEDEERVRHLKDLAKHLSLENNVQFEVN 381
E L KN+ + K + RN + ER + K ++ + SL NN + N
Sbjct: 277 EREQKLYKNKREYRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNN 330
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 2.5
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = -3
Query: 542 ELRSLLTKNEFLWNKIQLVLAGSCRNAEDEERVRHLKDLAKHLSLENNVQFEVN 381
E L KN+ + K + RN + ER + K ++ + L NN + N
Sbjct: 44 EREQKLYKNKREYRKYRETSKERSRNRTERERSKEPKIISNNNPLSNNYNYNNN 97
>AY569720-1|AAS86673.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 23.0 bits (47), Expect = 2.5
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +2
Query: 464 HCGRNPPEPTGSY 502
HCG PP P G +
Sbjct: 351 HCGNFPPRPMGPW 363
>AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective
protein-1 protein.
Length = 128
Score = 23.0 bits (47), Expect = 2.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +1
Query: 214 ACGATMSARGPPERC 258
ACG A+GP E C
Sbjct: 55 ACGIVQCAKGPDELC 69
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 21.8 bits (44), Expect = 5.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 517 FLVNRLLSSYIACSISG*SFSGLNW 591
F VN +++SY ISG +F L W
Sbjct: 289 FCVN-IVTSYCKTCISGRAFQVLTW 312
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 21.0 bits (42), Expect = 9.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 69 PSSVRTVNVFLVSDAKCSISS 7
PS++ +V + D KCSI S
Sbjct: 387 PSTLNIPSVKIDEDQKCSIES 407
>AF144379-1|AAD34586.1| 543|Apis mellifera glutamate transporter
Am-EAAT protein.
Length = 543
Score = 21.0 bits (42), Expect = 9.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 395 QFEVNVTYARLLHLYQTSLIGLHAMWNEHFGI 300
Q ++ V + +L+ L+G+ MW FGI
Sbjct: 260 QGKLIVDFFMILNEIIMKLVGIIIMWYSPFGI 291
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,421
Number of Sequences: 438
Number of extensions: 2317
Number of successful extensions: 67
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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