Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13g19
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    89   4e-20
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.95 
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   5.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.1  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   5.1  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   5.1  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   5.1  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.1  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   5.1  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   5.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   5.1  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   5.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 89.0 bits (211), Expect = 4e-20
 Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 11/206 (5%)
 Frame = -1

Query: 699 HCFIDTNGNVASPTLFSIRSGSSVLYSGGSIHSVSMIIVHERYNVPIRD----NDIAVLV 532
           HC ID N    +  +      S    +   +HS++ +I+H +Y++  +D    NDIA+L 
Sbjct: 203 HCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLK 262

Query: 531 LSSPVTLSASVAQACIPVQ-WAEVPDNSSVIHVGWGRTNVNVAQASSVLNEVEVRIVNRD 355
               +     V  AC+P Q + +    S V  +GWG T+ N    S +L +  + ++ + 
Sbjct: 263 TEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVLGWGHTSFN-GMLSHILQKTTLNMLTQV 321

Query: 354 VCRTRYEFLESVTGDPFPVTVNMICAGLLDIGGKDACQGDSGGPLIYNN------IVVGL 193
            C   Y       G+   + VN +CA      GKDACQ DSGGP+++ N      + +G+
Sbjct: 322 ECYKYY-------GN---IMVNAMCAYAK---GKDACQMDSGGPVLWQNPRTKRLVNIGI 368

Query: 192 TSWGYGCAEPMFPGVSARVSSYTNWI 115
            SWG  C +  +P  + +V SY +WI
Sbjct: 369 ISWGAECGK--YPNGNTKVGSYIDWI 392


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 430 GQD*CERSSSFFSPQRG*GPDSQQGCLPDSVRVSGERDR 314
           G D     SSFF    G  PD Q+  + +   + G+ DR
Sbjct: 349 GHDTTASGSSFFLAVMGCHPDIQEKVIQELDEIFGDSDR 387


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 520 CDPERERGASLYT 482
           C PER+RG   YT
Sbjct: 4   CVPERKRGRQTYT 16


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 609 IHSVSMIIVHERYNVPIRDND 547
           IH +  ++V  RYN P + +D
Sbjct: 346 IHVLPRLLVMRRYNTPSKRSD 366


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 240 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 347
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 240 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 347
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 240 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 347
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 240 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 347
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 240 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 347
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 240 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 347
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 240 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 347
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 240 LDKRPCLRYRAVPRRSCLR*LGRDPRSRSPETRTES 347
           L K+  L Y    RR+  + L +  +SRSPE+R  S
Sbjct: 55  LKKKMILEYEL--RRAREKKLSKRSKSRSPESRGRS 88


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 52  ERRGAPARQRSPAAIP 99
           E+  AP+ Q SP +IP
Sbjct: 117 EKLAAPSSQASPTSIP 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,534
Number of Sequences: 438
Number of extensions: 5029
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)