Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13g12
(726 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC048285-1|AAH48285.1| 475|Homo sapiens solute carrier family 4... 62 2e-09
AL139041-1|CAI95196.1| 475|Homo sapiens thymic stromal co-trans... 62 2e-09
AF242557-1|AAK28343.1| 475|Homo sapiens thymic stromal co-trans... 62 2e-09
AK055571-1|BAB70960.1| 475|Homo sapiens protein ( Homo sapiens ... 61 3e-09
BX537565-1|CAD97783.1| 461|Homo sapiens hypothetical protein pr... 46 1e-04
BC068556-1|AAH68556.1| 461|Homo sapiens solute carrier family 4... 46 1e-04
BC060850-1|AAH60850.1| 463|Homo sapiens SLC46A3 protein protein. 46 1e-04
BC036662-1|AAH36662.1| 461|Homo sapiens solute carrier family 4... 46 1e-04
AL359454-3|CAM24029.1| 461|Homo sapiens novel protein protein. 46 1e-04
AL359454-2|CAI17158.1| 463|Homo sapiens novel protein protein. 46 1e-04
DQ496103-1|ABF47092.1| 459|Homo sapiens heme carrier protein 1 ... 43 0.001
AL832613-1|CAD89945.1| 261|Homo sapiens hypothetical protein pr... 43 0.001
AK054669-1|BAB70789.1| 459|Homo sapiens protein ( Homo sapiens ... 43 0.001
BC010691-1|AAH10691.1| 431|Homo sapiens SLC46A1 protein protein. 34 0.60
AK074161-1|BAB84987.1| 163|Homo sapiens FLJ00234 protein protein. 33 0.79
BC050281-1|AAH50281.1| 1011|Homo sapiens PPFIBP1 protein protein. 33 1.0
AF034802-1|AAC26103.1| 1005|Homo sapiens liprin-beta1 protein. 33 1.0
AB033056-1|BAA86544.2| 932|Homo sapiens KIAA1230 protein protein. 33 1.0
U43279-1|AAB08981.1| 322|Homo sapiens nup 36 protein. 30 7.3
AK129677-1|BAC85214.1| 168|Homo sapiens protein ( Homo sapiens ... 30 7.3
>BC048285-1|AAH48285.1| 475|Homo sapiens solute carrier family 46,
member 2 protein.
Length = 475
Score = 62.1 bits (144), Expect = 2e-09
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Frame = -2
Query: 563 GEFTVMYLFA-RYRFNWNEIQFSFWSTYAMLTNLIGTLFSMSLFSNYLKVDDTXXXXXXX 387
G V+ LF R WN++Q + A T I + + +FS + DT
Sbjct: 299 GTVDVIPLFVLREPLGWNQVQVGYGMA-AGYTIFITSFLGVLVFSRCFR--DTTMIMIGM 355
Query: 386 XXXIMGAFVYAFARNNLEIYIAPLMEILNGTSFIAMRSIATKLVSGEEFGKVNSLFGLAE 207
GA + AF + YIA + + +RS +KL+ G +GKV + L+
Sbjct: 356 VSFGSGALLLAFVKETYMFYIARAVMLFALIPVTTIRSAMSKLIKGSSYGKVFVILQLSL 415
Query: 206 AMMPLVYGPLYSRVYMATLNVLPGAVFLLGASLTLPAI 93
A+ +V LY+++Y T+++ G+ F L + L+ AI
Sbjct: 416 ALTGVVTSTLYNKIYQLTMDMFVGSCFALSSFLSFLAI 453
>AL139041-1|CAI95196.1| 475|Homo sapiens thymic stromal
co-transporter protein.
Length = 475
Score = 62.1 bits (144), Expect = 2e-09
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Frame = -2
Query: 563 GEFTVMYLFA-RYRFNWNEIQFSFWSTYAMLTNLIGTLFSMSLFSNYLKVDDTXXXXXXX 387
G V+ LF R WN++Q + A T I + + +FS + DT
Sbjct: 299 GTVDVIPLFVLREPLGWNQVQVGYGMA-AGYTIFITSFLGVLVFSRCFR--DTTMIMIGM 355
Query: 386 XXXIMGAFVYAFARNNLEIYIAPLMEILNGTSFIAMRSIATKLVSGEEFGKVNSLFGLAE 207
GA + AF + YIA + + +RS +KL+ G +GKV + L+
Sbjct: 356 VSFGSGALLLAFVKETYMFYIARAVMLFALIPVTTIRSAMSKLIKGSSYGKVFVILQLSL 415
Query: 206 AMMPLVYGPLYSRVYMATLNVLPGAVFLLGASLTLPAI 93
A+ +V LY+++Y T+++ G+ F L + L+ AI
Sbjct: 416 ALTGVVTSTLYNKIYQLTMDMFVGSCFALSSFLSFLAI 453
>AF242557-1|AAK28343.1| 475|Homo sapiens thymic stromal
co-transporter protein.
Length = 475
Score = 62.1 bits (144), Expect = 2e-09
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 1/158 (0%)
Frame = -2
Query: 563 GEFTVMYLFA-RYRFNWNEIQFSFWSTYAMLTNLIGTLFSMSLFSNYLKVDDTXXXXXXX 387
G V+ LF R WN++Q + A T I + + +FS + DT
Sbjct: 299 GTVDVIPLFVLREPLGWNQVQVGYGMA-AGYTIFITSFLGVLVFSRCFR--DTTMIMIGM 355
Query: 386 XXXIMGAFVYAFARNNLEIYIAPLMEILNGTSFIAMRSIATKLVSGEEFGKVNSLFGLAE 207
GA + AF + YIA + + +RS +KL+ G +GKV + L+
Sbjct: 356 VSFGSGALLLAFVKETYMFYIARAVMLFALIPVTTIRSAMSKLIKGSSYGKVFVILQLSL 415
Query: 206 AMMPLVYGPLYSRVYMATLNVLPGAVFLLGASLTLPAI 93
A+ +V LY+++Y T+++ G+ F L + L+ AI
Sbjct: 416 ALTGVVTSTLYNKIYQLTMDMFVGSCFALSSFLSFLAI 453
>AK055571-1|BAB70960.1| 475|Homo sapiens protein ( Homo sapiens
cDNA FLJ31009 fis, clone HLUNG2000142, moderately
similar to Mus musculus putative thymic stromal
co-transporter TSCOT mRNA. ).
Length = 475
Score = 61.3 bits (142), Expect = 3e-09
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 1/158 (0%)
Frame = -2
Query: 563 GEFTVMYLFA-RYRFNWNEIQFSFWSTYAMLTNLIGTLFSMSLFSNYLKVDDTXXXXXXX 387
G V+ LF R WN++Q + A T I + + +FS + DT
Sbjct: 299 GTVDVIPLFVLREPLGWNQVQVGYGMA-AGYTIFITSFLGVLVFSRCFR--DTTMIMIGM 355
Query: 386 XXXIMGAFVYAFARNNLEIYIAPLMEILNGTSFIAMRSIATKLVSGEEFGKVNSLFGLAE 207
GA + AF + YIA + +RS +KL+ G +GKV + L+
Sbjct: 356 VSFGSGALLLAFVKETYMFYIARAAMLFALIPVTTIRSAMSKLIKGSSYGKVFVILQLSL 415
Query: 206 AMMPLVYGPLYSRVYMATLNVLPGAVFLLGASLTLPAI 93
A+ +V LY+++Y T+++ G+ F L + L+ AI
Sbjct: 416 ALTGVVTSTLYNKIYQLTMDMFVGSCFALSSFLSFLAI 453
>BX537565-1|CAD97783.1| 461|Homo sapiens hypothetical protein
protein.
Length = 461
Score = 46.4 bits (105), Expect = 1e-04
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 1/143 (0%)
Frame = -2
Query: 518 WNEIQFSFWSTYAMLTNLIGTLFSMSLFSNYLKVDDTXXXXXXXXXXIMGAFVYAFARNN 339
WNE+ + S + L L + LFS + +D + G + AFA
Sbjct: 292 WNEVFIGYGSALGSASFLTSFL-GIWLFSYCM--EDIHMAFIGIFTTMTGMAMTAFASTT 348
Query: 338 LEIYIAPLMEILNGTSFIAMRSIATKLVSGEEFGKVNSLFGLAEAMMPLVYGPLYSRVYM 159
L +++A + + F +RS+ +K+V E G + + E + + ++ +Y
Sbjct: 349 LMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTFNGIYS 408
Query: 158 ATLNVLPGAVFLLGAS-LTLPAI 93
AT+ PG FLL A L LPAI
Sbjct: 409 ATVAWYPGFTFLLSAGLLLLPAI 431
>BC068556-1|AAH68556.1| 461|Homo sapiens solute carrier family 46,
member 3 protein.
Length = 461
Score = 46.4 bits (105), Expect = 1e-04
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 1/143 (0%)
Frame = -2
Query: 518 WNEIQFSFWSTYAMLTNLIGTLFSMSLFSNYLKVDDTXXXXXXXXXXIMGAFVYAFARNN 339
WNE+ + S + L L + LFS + +D + G + AFA
Sbjct: 292 WNEVFIGYGSALGSASFLTSFL-GIWLFSYCM--EDIHMAFIGIFTTMTGMAMTAFASTT 348
Query: 338 LEIYIAPLMEILNGTSFIAMRSIATKLVSGEEFGKVNSLFGLAEAMMPLVYGPLYSRVYM 159
L +++A + + F +RS+ +K+V E G + + E + + ++ +Y
Sbjct: 349 LMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTFNGIYS 408
Query: 158 ATLNVLPGAVFLLGAS-LTLPAI 93
AT+ PG FLL A L LPAI
Sbjct: 409 ATVAWYPGFTFLLSAGLLLLPAI 431
>BC060850-1|AAH60850.1| 463|Homo sapiens SLC46A3 protein protein.
Length = 463
Score = 46.4 bits (105), Expect = 1e-04
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 1/143 (0%)
Frame = -2
Query: 518 WNEIQFSFWSTYAMLTNLIGTLFSMSLFSNYLKVDDTXXXXXXXXXXIMGAFVYAFARNN 339
WNE+ + S + L L + LFS + +D + G + AFA
Sbjct: 292 WNEVFIGYGSALGSASFLTSFL-GIWLFSYCM--EDIHMAFIGIFTTMTGMAMTAFASTT 348
Query: 338 LEIYIAPLMEILNGTSFIAMRSIATKLVSGEEFGKVNSLFGLAEAMMPLVYGPLYSRVYM 159
L +++A + + F +RS+ +K+V E G + + E + + ++ +Y
Sbjct: 349 LMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTFNGIYS 408
Query: 158 ATLNVLPGAVFLLGAS-LTLPAI 93
AT+ PG FLL A L LPAI
Sbjct: 409 ATVAWYPGFTFLLSAGLLLLPAI 431
>BC036662-1|AAH36662.1| 461|Homo sapiens solute carrier family 46,
member 3 protein.
Length = 461
Score = 46.4 bits (105), Expect = 1e-04
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 1/143 (0%)
Frame = -2
Query: 518 WNEIQFSFWSTYAMLTNLIGTLFSMSLFSNYLKVDDTXXXXXXXXXXIMGAFVYAFARNN 339
WNE+ + S + L L + LFS + +D + G + AFA
Sbjct: 292 WNEVFIGYGSALGSASFLTSFL-GIWLFSYCM--EDIHMAFIGIFTTMTGMAMTAFASTT 348
Query: 338 LEIYIAPLMEILNGTSFIAMRSIATKLVSGEEFGKVNSLFGLAEAMMPLVYGPLYSRVYM 159
L +++A + + F +RS+ +K+V E G + + E + + ++ +Y
Sbjct: 349 LMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTFNGIYS 408
Query: 158 ATLNVLPGAVFLLGAS-LTLPAI 93
AT+ PG FLL A L LPAI
Sbjct: 409 ATVAWYPGFTFLLSAGLLLLPAI 431
>AL359454-3|CAM24029.1| 461|Homo sapiens novel protein protein.
Length = 461
Score = 46.4 bits (105), Expect = 1e-04
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 1/143 (0%)
Frame = -2
Query: 518 WNEIQFSFWSTYAMLTNLIGTLFSMSLFSNYLKVDDTXXXXXXXXXXIMGAFVYAFARNN 339
WNE+ + S + L L + LFS + +D + G + AFA
Sbjct: 292 WNEVFIGYGSALGSASFLTSFL-GIWLFSYCM--EDIHMAFIGIFTTMTGMAMTAFASTT 348
Query: 338 LEIYIAPLMEILNGTSFIAMRSIATKLVSGEEFGKVNSLFGLAEAMMPLVYGPLYSRVYM 159
L +++A + + F +RS+ +K+V E G + + E + + ++ +Y
Sbjct: 349 LMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTFNGIYS 408
Query: 158 ATLNVLPGAVFLLGAS-LTLPAI 93
AT+ PG FLL A L LPAI
Sbjct: 409 ATVAWYPGFTFLLSAGLLLLPAI 431
>AL359454-2|CAI17158.1| 463|Homo sapiens novel protein protein.
Length = 463
Score = 46.4 bits (105), Expect = 1e-04
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 1/143 (0%)
Frame = -2
Query: 518 WNEIQFSFWSTYAMLTNLIGTLFSMSLFSNYLKVDDTXXXXXXXXXXIMGAFVYAFARNN 339
WNE+ + S + L L + LFS + +D + G + AFA
Sbjct: 292 WNEVFIGYGSALGSASFLTSFL-GIWLFSYCM--EDIHMAFIGIFTTMTGMAMTAFASTT 348
Query: 338 LEIYIAPLMEILNGTSFIAMRSIATKLVSGEEFGKVNSLFGLAEAMMPLVYGPLYSRVYM 159
L +++A + + F +RS+ +K+V E G + + E + + ++ +Y
Sbjct: 349 LMMFLARVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTFNGIYS 408
Query: 158 ATLNVLPGAVFLLGAS-LTLPAI 93
AT+ PG FLL A L LPAI
Sbjct: 409 ATVAWYPGFTFLLSAGLLLLPAI 431
>DQ496103-1|ABF47092.1| 459|Homo sapiens heme carrier protein 1
protein.
Length = 459
Score = 42.7 bits (96), Expect = 0.001
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Frame = -2
Query: 374 MGAFVYAFARNNLEIYIAPLMEILNGTSFIAM------RSIATKLVSGEEFGKVNSLFGL 213
+G V+AFA I PLM G F+++ R+ +KLV E G + S
Sbjct: 344 LGMVVFAFAT------ITPLMFTGYGLLFLSLVITPVIRAKLSKLVRETEQGALFSAVAC 397
Query: 212 AEAMMPLVYGPLYSRVYMATLNVLPGAVFLLGASLTL-PAIFI 87
++ L +++ +Y ATLN + G FLLGA L L PA+ I
Sbjct: 398 VNSLAMLTASGIFNSLYPATLNFMKGFPFLLGAGLLLIPAVLI 440
>AL832613-1|CAD89945.1| 261|Homo sapiens hypothetical protein
protein.
Length = 261
Score = 42.7 bits (96), Expect = 0.001
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Frame = -2
Query: 374 MGAFVYAFARNNLEIYIAPLMEILNGTSFIAM------RSIATKLVSGEEFGKVNSLFGL 213
+G V+AFA I PLM G F+++ R+ +KLV E G + S
Sbjct: 146 LGMVVFAFAT------ITPLMFTGYGLLFLSLVITPVIRAKLSKLVRETEQGALFSAVAC 199
Query: 212 AEAMMPLVYGPLYSRVYMATLNVLPGAVFLLGASLTL-PAIFI 87
++ L +++ +Y ATLN + G FLLGA L L PA+ I
Sbjct: 200 VNSLAMLTASGIFNSLYPATLNFMKGFPFLLGAGLLLIPAVLI 242
>AK054669-1|BAB70789.1| 459|Homo sapiens protein ( Homo sapiens
cDNA FLJ30107 fis, clone BNGH41000198, weakly similar to
TETRACYCLINE RESISTANCE PROTEIN, CLASS E. ).
Length = 459
Score = 42.7 bits (96), Expect = 0.001
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Frame = -2
Query: 374 MGAFVYAFARNNLEIYIAPLMEILNGTSFIAM------RSIATKLVSGEEFGKVNSLFGL 213
+G V+AFA I PLM G F+++ R+ +KLV E G + S
Sbjct: 344 LGMVVFAFAT------ITPLMFTGYGLLFLSLVITPVIRAKLSKLVRETEQGALFSAVAC 397
Query: 212 AEAMMPLVYGPLYSRVYMATLNVLPGAVFLLGASLTL-PAIFI 87
++ L +++ +Y ATLN + G FLLGA L L PA+ I
Sbjct: 398 VNSLAMLTASGIFNSLYPATLNFMKGFPFLLGAGLLLIPAVLI 440
>BC010691-1|AAH10691.1| 431|Homo sapiens SLC46A1 protein protein.
Length = 431
Score = 33.9 bits (74), Expect = 0.60
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -2
Query: 239 GKVNSLFGLAEAMMPLVYGPLYSRVYMATLNVLPGAVFLLGASLTL-PAIFI 87
G + S ++ L +++ +Y ATLN + G FLLGA L L PA+ I
Sbjct: 361 GALFSAVACVNSLAMLTASGIFNSLYPATLNFMKGFPFLLGAGLLLIPAVLI 412
>AK074161-1|BAB84987.1| 163|Homo sapiens FLJ00234 protein protein.
Length = 163
Score = 33.5 bits (73), Expect = 0.79
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -2
Query: 299 GTSFIAMRSIATKLVSGEEFGKVNSLFGLAEAMMPLVYGPLYSRVYMATLNVLPGAVFLL 120
G A +I + +G F V + LA L +++ +Y ATLN + G FLL
Sbjct: 77 GMVVFAFATITPLMFTGALFSGVACVNSLAM----LTASGIFNSLYPATLNFMKGFPFLL 132
Query: 119 GASLTL-PAIFI 87
GA L L PA+ I
Sbjct: 133 GAGLLLIPAVLI 144
>BC050281-1|AAH50281.1| 1011|Homo sapiens PPFIBP1 protein protein.
Length = 1011
Score = 33.1 bits (72), Expect = 1.0
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 197 ASSPPPDRTKNSPCQIPPRSPVSLRSIASL*MMF 298
ASS P D +NSP QIPP SP S + + +F
Sbjct: 560 ASSRPKDSQRNSPFQIPPPSPDSKKKSRGIMKLF 593
>AF034802-1|AAC26103.1| 1005|Homo sapiens liprin-beta1 protein.
Length = 1005
Score = 33.1 bits (72), Expect = 1.0
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 197 ASSPPPDRTKNSPCQIPPRSPVSLRSIASL*MMF 298
ASS P D +NSP QIPP SP S + + +F
Sbjct: 554 ASSRPKDSQRNSPFQIPPPSPDSKKKSRGIMKLF 587
>AB033056-1|BAA86544.2| 932|Homo sapiens KIAA1230 protein protein.
Length = 932
Score = 33.1 bits (72), Expect = 1.0
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 197 ASSPPPDRTKNSPCQIPPRSPVSLRSIASL*MMF 298
ASS P D +NSP QIPP SP S + + +F
Sbjct: 481 ASSRPKDSQRNSPFQIPPPSPDSKKKSRGIMKLF 514
>U43279-1|AAB08981.1| 322|Homo sapiens nup 36 protein.
Length = 322
Score = 30.3 bits (65), Expect = 7.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 353 FARNNLEIYIAPLMEILNGTSFIAMRSIATKLVSGEEFGKVNSL 222
F +NN YI+P +E L S I +R I ++ +GKV L
Sbjct: 175 FFKNNY--YISPSIETLGNKSLIELRKINNLVIGHRHYGKVEFL 216
>AK129677-1|BAC85214.1| 168|Homo sapiens protein ( Homo sapiens
cDNA FLJ26166 fis, clone ADG02852. ).
Length = 168
Score = 30.3 bits (65), Expect = 7.3
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +2
Query: 164 RRGSREVRKPAASSPPPDRTKNSPCQIPPRSPV 262
RRG R PAA +PPP R P PP PV
Sbjct: 59 RRGLRGASDPAARAPPPPRAPPPP-PPPPLPPV 90
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,326,398
Number of Sequences: 237096
Number of extensions: 2246550
Number of successful extensions: 9952
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 9292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9935
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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