Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13g12
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    25   0.73 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.1  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -2

Query: 305 LNGTSFIAMRSIATKLVSGEEFGKVNSLFGLAEAMMPLVYGPLYSRVYMATLN 147
           L  ++F +     T  ++GE F   + +FG+  A+ PL     YS +    LN
Sbjct: 224 LTSSTFASDPRYTTFTINGESFTLQSGIFGM--ALSPLTQNLYYSALSSHNLN 274


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 184 P*TSGIIASARPNKEFTLPNSSPLTSFVAIDRIAMNDVPFKISIN 318
           P TS I  S       +LP SS   + + +++  +NDV  +I+ N
Sbjct: 842 PTTSVISMSGTTVPITSLPASSTSINSITVEKDVINDVKTQITTN 886


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = -3

Query: 196 RWFT--DLSTPASTWRRSTCCQALSSCSEP 113
           +WF   D+ T    W R T    +S+CS P
Sbjct: 423 KWFNSLDIRTEELIWARGTKDIPISACSLP 452


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = -3

Query: 196 RWFT--DLSTPASTWRRSTCCQALSSCSEP 113
           +WF   D+ T    W R T    +S+CS P
Sbjct: 513 KWFNSLDIRTEELIWARGTKDIPISACSLP 542


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 182 VRKPAASSPPPDRTKNSP 235
           VRK  A+ PP  +TK  P
Sbjct: 242 VRKVHATKPPKPQTKTKP 259


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 327 YRSVDGNFKWNIIHSDAID 271
           Y  + GN KW  IH + I+
Sbjct: 566 YAFIPGNLKWLDIHGNFIE 584


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,576
Number of Sequences: 438
Number of extensions: 4478
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)