Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13g08
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   3.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   3.7  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   3.7  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   3.7  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   3.7  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   3.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.7  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   4.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   4.9  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   8.6  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 538 HAPFGPVWNHILGF 497
           + P  P+W+ ILGF
Sbjct: 44  YPPLNPMWHGILGF 57


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 285 RATWKQRIYDS*EKEKLVIGKII 217
           R TWK+R  D  E+E+    KII
Sbjct: 60  RETWKERSRDRTERERSREPKII 82


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 285 RATWKQRIYDS*EKEKLVIGKII 217
           R TWK+R  D  E+E+    KII
Sbjct: 60  RETWKERSRDRTERERSREPKII 82


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 285 RATWKQRIYDS*EKEKLVIGKII 217
           R TWK+R  D  E+E+    KII
Sbjct: 60  RETWKERSRDRTERERSREPKII 82


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 285 RATWKQRIYDS*EKEKLVIGKII 217
           R TWK+R  D  E+E+    KII
Sbjct: 60  RETWKERSRDRTERERSREPKII 82


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 538 HAPFGPVWNHILGF 497
           + P  P+W+ ILGF
Sbjct: 10  YPPLNPMWHGILGF 23


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
 Frame = -3

Query: 535  APFGPVWNHILGFWNRRHDPNI--LFIKFEEMKRNLPAVVRRTAKFLEKSLSDDDVTKLC 362
            APF   W+H L    RR D     +++ F   +RNL    +   + +E  + D     L 
Sbjct: 978  APFRGFWHHRLAEIKRRPDLEYGKVWLFFGCRQRNLDLYRQEKEEMVELGVLDKIFLALS 1037

Query: 361  DHLSFSNMKTNRAVNLEA 308
                F        +  EA
Sbjct: 1038 RESGFKKTYVQDLIQAEA 1055


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 105 CTNKKKLMQK*NYSKLRPVP 164
           C N KKL    NY +  P+P
Sbjct: 101 CNNYKKLYYNINYIEQIPIP 120


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 105 CTNKKKLMQK*NYSKLRPVP 164
           C N KKL    NY +  P+P
Sbjct: 101 CNNYKKLYYNINYIEQIPIP 120


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 96  FYRCTNKKKLMQK*NYSKLRPVP 164
           +Y   N KKL    NY +  P+P
Sbjct: 317 YYNNNNYKKLYYNINYIEQIPIP 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,684
Number of Sequences: 438
Number of extensions: 4670
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)