Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt13g02
(609 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 23 3.1
EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor 1-a... 23 3.1
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 23 3.1
AF393494-1|AAL60419.1| 144|Apis mellifera odorant binding prote... 23 3.1
AF166496-1|AAD51944.1| 144|Apis mellifera pheromone-binding pro... 23 3.1
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 23 3.1
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 22 4.1
AF388659-3|AAK71993.1| 548|Apis mellifera 1D-myo-inositol-trisp... 22 4.1
AF388659-2|AAK71994.1| 463|Apis mellifera 1D-myo-inositol-trisp... 22 4.1
AF388659-1|AAK71995.1| 782|Apis mellifera 1D-myo-inositol-trisp... 22 4.1
DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein. 22 5.4
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 21 7.1
EF493864-1|ABP65286.1| 247|Apis mellifera triosephoshpate isome... 21 9.4
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 594 ENRQTREHLLVFFT 553
+N QTREH L+ FT
Sbjct: 129 KNGQTREHALLAFT 142
>EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor
1-alpha protein.
Length = 172
Score = 22.6 bits (46), Expect = 3.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 594 ENRQTREHLLVFFT 553
+N QTREH L+ FT
Sbjct: 56 KNGQTREHALLAFT 69
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 22.6 bits (46), Expect = 3.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 594 ENRQTREHLLVFFT 553
+N QTREH L+ FT
Sbjct: 72 KNGQTREHALLAFT 85
>AF393494-1|AAL60419.1| 144|Apis mellifera odorant binding protein
ASP1 protein.
Length = 144
Score = 22.6 bits (46), Expect = 3.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -3
Query: 598 KGKSTNSRAFTCFLYQSKNSRSLISSSA 515
KG N + TC++Y + SL+ A
Sbjct: 61 KGNLVNEPSITCYMYCLLEAFSLVDDEA 88
>AF166496-1|AAD51944.1| 144|Apis mellifera pheromone-binding
protein ASP1 protein.
Length = 144
Score = 22.6 bits (46), Expect = 3.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -3
Query: 598 KGKSTNSRAFTCFLYQSKNSRSLISSSA 515
KG N + TC++Y + SL+ A
Sbjct: 61 KGNLVNEPSITCYMYCLLEAFSLVDDEA 88
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 594 ENRQTREHLLVFFT 553
+N QTREH L+ FT
Sbjct: 129 KNGQTREHALLAFT 142
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 22.2 bits (45), Expect = 4.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 412 TVILVWV*SAARKSPL 365
T++LVW SAA SP+
Sbjct: 306 TILLVWAISAAIGSPI 321
>AF388659-3|AAK71993.1| 548|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
Length = 548
Score = 22.2 bits (45), Expect = 4.1
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3
Query: 91 TLPLPRHMP 65
TLPLP+H+P
Sbjct: 503 TLPLPQHLP 511
>AF388659-2|AAK71994.1| 463|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
Length = 463
Score = 22.2 bits (45), Expect = 4.1
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3
Query: 91 TLPLPRHMP 65
TLPLP+H+P
Sbjct: 418 TLPLPQHLP 426
>AF388659-1|AAK71995.1| 782|Apis mellifera
1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
Length = 782
Score = 22.2 bits (45), Expect = 4.1
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3
Query: 91 TLPLPRHMP 65
TLPLP+H+P
Sbjct: 737 TLPLPQHLP 745
>DQ288392-1|ABC41342.1| 120|Apis mellifera nanos protein.
Length = 120
Score = 21.8 bits (44), Expect = 5.4
Identities = 7/21 (33%), Positives = 11/21 (52%)
Frame = -2
Query: 269 CKVTGKCGSVTVRLIPAPRGT 207
C + G CG + + P+GT
Sbjct: 75 CPICGACGDIAHTVKYCPKGT 95
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 21.4 bits (43), Expect = 7.1
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -3
Query: 82 LPRHMPTSL 56
LP+H+PTSL
Sbjct: 379 LPKHLPTSL 387
>EF493864-1|ABP65286.1| 247|Apis mellifera triosephoshpate
isomerase protein.
Length = 247
Score = 21.0 bits (42), Expect = 9.4
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +3
Query: 180 LRNWRRHNTSTTRGRNQPDCYGTTLAGDLARD 275
LRNW N + T YG ++ A+D
Sbjct: 187 LRNWFSKNVNQTVAETVRIIYGGSVTAGNAKD 218
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,374
Number of Sequences: 438
Number of extensions: 4460
Number of successful extensions: 26
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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