Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt13g01
         (171 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    19   7.3  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    19   7.3  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -1

Query: 114 LIF--IKISLKICNFISLLNIKLK 49
           LIF  I +S+ IC  + +LN+  +
Sbjct: 311 LIFAMILVSISICVTVVVLNVHFR 334


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -1

Query: 114 LIF--IKISLKICNFISLLNIKLK 49
           LIF  I +S+ IC  + +LN+  +
Sbjct: 311 LIFAMILVSISICVTVVVLNVHFR 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,694
Number of Sequences: 438
Number of extensions: 599
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 36
effective length of database: 130,575
effective search space used:  2611500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)